C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide H
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021405 Polr2h-001 ENSMUSG00000021018 10090 + 16:20717665-20722267 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungOvaryPlacentaENSMUST00000021405
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Ovary Placenta
ENSMUST00000021405 12.537±4.95 20.804±0.01 26.738±2.54 11.292±0.65 11.846±0.94 27.415±9.32 8.207±0.38 30.928±4.07 32.448±23.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000570 CIL_000570_0002 CGP 16:20693282-20717746
CIL_00056X CIL_00056X_0002 CGP 16:20702964-20722267
CIL_00056Y CIL_00056Y_0002 CGP 16:20717665-20734511

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001055 IBA RNA polymerase II activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0006360 IBA transcription from RNA polymerase I promoter
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006383 IBA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000429568 POLR2H-009 protein_coding Homo_sapiens 0 475
ENST00000430783 POLR2H-006 protein_coding Homo_sapiens 0 233
ENST00000438240 POLR2H-003 protein_coding Homo_sapiens 0 586
ENST00000443489 POLR2H-007 protein_coding Homo_sapiens 0 233
ENST00000452961 POLR2H-008 protein_coding Homo_sapiens 0 676
ENST00000455712 POLR2H-005 protein_coding Homo_sapiens 0 665
ENST00000456318 POLR2H-001 protein_coding Homo_sapiens 0 721
ENST00000476003 POLR2H-012 retained_intron Homo_sapiens 0 342
ENST00000488213 POLR2H-010 retained_intron Homo_sapiens 0 580
ENST00000489043 POLR2H-013 retained_intron Homo_sapiens 0 375

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