C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuro-oncological ventral antigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021438 Nova1-201 ENSMUSG00000021047 10090 - 12:46694517-46818775 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021438
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021438 3.697±1.40 1.404±0.41 0.278±0.04 26.979±16.02 3.565±1.82 0.704±0.18 0.628±0.06 0.228±0.08 0.090±0.04 1.695±0.29 0.361±0.09 1.915±0.93 0.081±0.10 0.374±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EO CIL_0005EO_0002 CGP 12:44852488-46818775

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003729 IDA mRNA binding
GO:0005634 IC nucleus
GO:0005730 IEA nucleolus
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0051252 IGI regulation of RNA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344429 NOVA1-001 protein_coding Homo_sapiens 0 817
ENST00000347476 NOVA1-012 protein_coding Homo_sapiens 0 440
ENST00000449198 NOVA1-007 protein_coding Homo_sapiens 0 1376
ENST00000465357 NOVA1-002 protein_coding Homo_sapiens 0 5299
ENST00000483536 NOVA1-004 nonsense_mediated_decay Homo_sapiens 0 9335
ENST00000539517 NOVA1-003 protein_coding Homo_sapiens 0 6143
ENST00000546546 NOVA1-011 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000547415 NOVA1-009 retained_intron Homo_sapiens 4e-24 115
ENST00000547619 NOVA1-010 protein_coding Homo_sapiens 0 854
ENST00000549146 NOVA1-008 protein_coding Homo_sapiens 0 845
ENST00000549571 NOVA1-006 protein_coding Homo_sapiens 0 806
ENST00000574031 NOVA1-013 protein_coding Homo_sapiens 0 726

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