C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nrde-2 necessary for RNA interference, domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021596 Nrde2-201 ENSMUSG00000021179 10090 - 12:100125452-100159653 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021596
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021596 3.478±1.04 2.206±0.92 4.091±0.23 5.646±1.35 2.121±0.99 1.872±0.44 1.344±0.42 3.020±0.96 2.069±0.49 3.257±0.58 2.123±0.80 3.362±1.58 5.282±1.62 2.415±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JW CIL_0001JW_0002 CGP 12:100110186-100159653
CIL_0001U8 CIL_0001U8_0002 CGP 12:100125452-100209806

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354366 NRDE2-001 protein_coding Homo_sapiens 0 3007
ENST00000553409 NRDE2-002 nonsense_mediated_decay Homo_sapiens 0 2856
ENST00000554464 NRDE2-007 protein_coding Homo_sapiens 0 627
ENST00000555903 NRDE2-004 retained_intron Homo_sapiens 0 660
ENST00000556189 NRDE2-003 nonsense_mediated_decay Homo_sapiens 0 2084
ENST00000557064 NRDE2-006 processed_transcript Homo_sapiens 0 346
ENST00000557732 NRDE2-008 retained_intron Homo_sapiens 0 255
ENST00000612614 NRDE2-009 retained_intron Homo_sapiens 4.99997e-41 174

Loading