C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NRDE-2, necessary for RNA interference, domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354366 NRDE2-001 ENSG00000119720 9606 - 14:90267856-90332137 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354366
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354366 1.151±0.00 2.531±0.00 0.625±0.00 1.210±0.79 1.332±0.22 1.224±0.44 0.743±0.47 1.074±0.61 0.953±0.20 0.774±0.04 0.319±0.00 0.959±0.43 1.553±0.22 2.229±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002L5 CIL_0002L5_0002 CGP 14:90061765-90275429
CIL_0001JW CIL_0001JW_0001 CGP 14:90256495-90332137
CIL_0001U8 CIL_0001U8_0001 CGP 14:90267856-90408261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021596 Nrde2-201 protein_coding Mus_musculus 0 3007
ENSMUST00000021595 Psmc1-201 protein_coding Mus_musculus 0 252
ENSMUST00000122140 Gm9575-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000009 69

Loading