C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001JW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100764-ENSG00000119720 CGP 9606 14:90256495-90332137
GeneTranscriptPositionBiotype
ENSG00000119720 (NRDE2)
NRDE-2, necessary for RNA interference, domain containing 		ENST00000354366 (NRDE2-001) 90267856-90332137 protein_coding
ENST00000553409 (NRDE2-002) 90278060-90331910 nonsense_mediated_decay
ENST00000554464 (NRDE2-007) 90290575-90302837 protein_coding
ENST00000555903 (NRDE2-004) 90278558-90288885 retained_intron
ENST00000556189 (NRDE2-003) 90278054-90312516 nonsense_mediated_decay
ENST00000557064 (NRDE2-006) 90303954-90304654 processed_transcript
ENST00000557106 (NRDE2-005) 90316587-90331969 processed_transcript
ENST00000557732 (NRDE2-008) 90278061-90279283 retained_intron
ENST00000612614 (NRDE2-009) 90278058-90281595 retained_intron
CIL_0001JW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021178-ENSMUSG00000021179 CGP 10090 12:100110186-100159653
GeneTranscriptPositionBiotype
ENSMUSG00000021178 (Psmc1)
protease (prosome, macropain) 26S subunit, ATPase 1 		ENSMUST00000021595 (Psmc1-201) 100110186-100123364 protein_coding
ENSMUSG00000021179 (Nrde2)
nrde-2 necessary for RNA interference, domain containing 		ENSMUST00000021596 (Nrde2-201) 100125452-100159653 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JW_0001ENSG00000119720ENST00000354366ENST00000553409ENST00000554464ENST00000555903ENST00000556189ENST00000557064ENST00000557106ENST00000557732ENST00000612614CIL_0001JW_0002ENSMUSG00000021178ENSMUST00000021595ENSMUSG00000021179ENSMUST00000021596
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JW_0001ENSG00000119720ENST00000354366ENST00000553409CIL_0001JW_0002ENSMUSG00000021178ENSMUST00000021595ENSMUSG00000021179ENSMUST00000021596
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119720 ENST00000354366 1.151±0.00 2.531±0.00 0.625±0.00 1.210±0.79 1.332±0.22 1.224±0.44 0.743±0.47 1.074±0.61 0.953±0.20 0.774±0.04 0.319±0.00 0.959±0.43 1.553±0.22 2.229±0.00
ENST00000553409 N/A N/A N/A N/A N/A N/A 0.533±0.00 N/A 2.136±0.00 1.661±0.00 N/A 1.988±0.00 N/A N/A
ENST00000554464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021178 ENSMUST00000021595 25.383±2.19 24.035±2.85 25.629±2.63 54.912±35.08 20.604±6.81 18.707±2.31 25.045±1.54 31.042±1.43 41.146±11.76 21.243±1.40 57.819±2.62 38.323±29.70 82.516±50.79 28.748±13.71
ENSMUSG00000021179 ENSMUST00000021596 3.478±1.04 2.206±0.92 4.091±0.23 5.646±1.35 2.121±0.99 1.872±0.44 1.344±0.42 3.020±0.96 2.069±0.49 3.257±0.58 2.123±0.80 3.362±1.58 5.282±1.62 2.415±0.69

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