C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001U8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119720-ENSG00000198668 CGP 9606 14:90267856-90408261
GeneTranscriptPositionBiotype
ENSG00000119720 (NRDE2)
NRDE-2, necessary for RNA interference, domain containing 		ENST00000354366 (NRDE2-001) 90267856-90332137 protein_coding
ENST00000553409 (NRDE2-002) 90278060-90331910 nonsense_mediated_decay
ENST00000554464 (NRDE2-007) 90290575-90302837 protein_coding
ENST00000555903 (NRDE2-004) 90278558-90288885 retained_intron
ENST00000556189 (NRDE2-003) 90278054-90312516 nonsense_mediated_decay
ENST00000557064 (NRDE2-006) 90303954-90304654 processed_transcript
ENST00000557106 (NRDE2-005) 90316587-90331969 processed_transcript
ENST00000557732 (NRDE2-008) 90278061-90279283 retained_intron
ENST00000612614 (NRDE2-009) 90278058-90281595 retained_intron
ENSG00000198668 (CALM1)
calmodulin 1 (phosphorylase kinase, delta) 		ENST00000356978 (CALM1-001) 90396983-90408261 protein_coding
ENST00000447653 (CALM1-004) 90397029-90405072 protein_coding
ENST00000544280 (CALM1-006) 90398262-90405107 protein_coding
ENST00000553422 (CALM1-013) 90401333-90404833 nonsense_mediated_decay
ENST00000553542 (CALM1-012) 90397056-90405048 protein_coding
ENST00000553630 (CALM1-003) 90397040-90405603 nonsense_mediated_decay
ENST00000553964 (CALM1-005) 90397932-90404807 retained_intron
ENST00000553995 (CALM1-010) 90397032-90404067 retained_intron
ENST00000554296 (CALM1-014) 90403632-90404746 retained_intron
ENST00000555132 (CALM1-016) 90397032-90398803 processed_transcript
ENST00000555267 (CALM1-011) 90399978-90404153 retained_intron
ENST00000556721 (CALM1-015) 90404168-90404785 retained_intron
ENST00000556757 (CALM1-009) 90397032-90401613 retained_intron
ENST00000557020 (CALM1-007) 90396502-90404496 protein_coding
ENST00000557123 (CALM1-008) 90397032-90400431 retained_intron
ENSG00000238758 (AL512791.1)
 ENST00000458940 (AL512791.1-201) 90381198-90381252 miRNA
ENSG00000242571 (RPL21P11)
ribosomal protein L21 pseudogene 11 		ENST00000461458 (RPL21P11-001) 90366697-90367179 processed_pseudogene
ENSG00000275198 (RP11-471B22.3)
 ENST00000615251 (RP11-471B22.3-001) 90383365-90387973 lincRNA
CIL_0001U8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021179-ENSMUSG00000001175 CGP 10090 12:100125452-100209806
GeneTranscriptPositionBiotype
ENSMUSG00000001175 (Calm1)
calmodulin 1 		ENSMUST00000001204 (Calm1-002) 100200144-100209806 protein_coding
ENSMUST00000110082 (Calm1-001) 100199435-100209806 protein_coding
ENSMUST00000127300 (Calm1-004) 100205403-100206495 retained_intron
ENSMUST00000153524 (Calm1-003) 100199529-100203937 retained_intron
ENSMUSG00000021179 (Nrde2)
nrde-2 necessary for RNA interference, domain containing 		ENSMUST00000021596 (Nrde2-201) 100125452-100159653 protein_coding
ENSMUSG00000072884 (Gm10433)
predicted gene 10433 		ENSMUST00000138678 (Gm10433-002) 100188773-100192745 processed_transcript
ENSMUST00000146364 (Gm10433-001) 100187968-100193540 processed_transcript
ENSMUSG00000096947 (Gm26723)
predicted gene, 26723 		ENSMUST00000180771 (Gm26723-201) 100208988-100209814 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001U8_0001ENSG00000119720ENST00000354366ENST00000553409ENST00000554464ENST00000555903ENST00000556189ENST00000557064ENST00000557106ENST00000557732ENST00000612614ENSG00000198668ENST00000356978ENST00000447653ENST00000544280ENST00000553422ENST00000553542ENST00000553630ENST00000553964ENST00000553995ENST00000554296ENST00000555132ENST00000555267ENST00000556721ENST00000556757ENST00000557020ENST00000557123ENSG00000238758ENST00000458940ENSG00000242571ENST00000461458ENSG00000275198ENST00000615251CIL_0001U8_0002ENSMUSG00000001175ENSMUST00000001204ENSMUST00000110082ENSMUST00000127300ENSMUST00000153524ENSMUSG00000021179ENSMUST00000021596ENSMUSG00000072884ENSMUST00000138678ENSMUST00000146364ENSMUSG00000096947ENSMUST00000180771
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001U8_0001ENSG00000119720ENST00000354366ENST00000553409ENSG00000198668ENST00000356978ENST00000553542ENST00000553630ENST00000557020ENSG00000238758ENST00000458940ENSG00000242571ENST00000461458ENSG00000275198ENST00000615251CIL_0001U8_0002ENSMUSG00000001175ENSMUST00000001204ENSMUST00000110082ENSMUST00000127300ENSMUST00000153524ENSMUSG00000021179ENSMUST00000021596ENSMUSG00000072884ENSMUST00000138678ENSMUST00000146364ENSMUSG00000096947ENSMUST00000180771
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119720 ENST00000354366 1.151±0.00 2.531±0.00 0.625±0.00 1.210±0.79 1.332±0.22 1.224±0.44 0.743±0.47 1.074±0.61 0.953±0.20 0.774±0.04 0.319±0.00 0.959±0.43 1.553±0.22 2.229±0.00
ENST00000553409 N/A N/A N/A N/A N/A N/A 0.533±0.00 N/A 2.136±0.00 1.661±0.00 N/A 1.988±0.00 N/A N/A
ENST00000554464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198668 ENST00000356978 89.996±0.00 62.554±0.00 20.006±0.00 287.951±22.69 75.346±50.06 76.414±42.41 43.377±21.00 35.982±20.64 32.672±14.66 47.537±17.47 61.235±40.03 36.010±14.68 37.011±2.68 62.027±0.00
ENST00000447653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553542 N/A N/A 31.140±0.00 114.514±0.00 48.028±0.00 94.653±32.33 26.361±0.00 30.235±0.00 54.041±0.00 46.271±0.00 25.013±0.00 50.047±28.49 63.849±14.55 48.492±11.94
ENST00000553630 86.956±0.00 59.262±0.00 N/A N/A N/A 82.707±0.00 41.080±0.00 57.110±0.00 26.038±0.00 114.728±0.00 N/A 27.387±4.59 68.177±14.91 38.657±10.92
ENST00000553964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 72.475±0.00 N/A 86.292±0.00
ENST00000557123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000238758 ENST00000458940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.932±0.00
ENSG00000242571 ENST00000461458 0.082±0.00 0.197±0.00 N/A 0.109±0.05 0.083±0.00 0.130±0.00 0.027±0.00 0.112±0.00 0.026±0.00 0.053±0.00 0.181±0.00 0.133±0.09 0.272±0.00 0.048±0.00
ENSG00000275198 ENST00000615251 0.071±0.00 0.313±0.00 N/A 0.163±0.07 0.162±0.10 0.052±0.03 0.115±0.08 0.087±0.01 0.090±0.00 0.064±0.03 0.035±0.00 0.045±0.00 0.060±0.01 1.011±0.34
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001175 ENSMUST00000001204 N/A N/A N/A 60.284±0.00 N/A N/A N/A N/A N/A N/A N/A 22.009±9.47 55.312±0.00 28.654±0.00
ENSMUST00000110082 46.316±3.80 14.788±2.39 36.584±10.36 102.916±72.41 35.765±7.20 58.966±3.80 19.212±4.40 28.168±1.61 24.086±10.30 67.470±6.69 79.626±18.08 30.133±4.53 82.682±27.33 66.378±2.39
ENSMUST00000127300 N/A N/A N/A 1317.140±0.00 N/A N/A N/A N/A N/A N/A N/A 509.059±0.00 1117.003±178.37 671.140±0.00
ENSMUST00000153524 173.076±15.47 253.405±38.07 112.221±0.00 144.274±18.75 268.753±39.31 417.168±35.50 39.800±8.07 72.044±12.44 66.444±21.01 254.878±68.83 N/A 217.222±19.06 152.367±8.60 190.440±6.90
ENSMUSG00000021179 ENSMUST00000021596 3.478±1.04 2.206±0.92 4.091±0.23 5.646±1.35 2.121±0.99 1.872±0.44 1.344±0.42 3.020±0.96 2.069±0.49 3.257±0.58 2.123±0.80 3.362±1.58 5.282±1.62 2.415±0.69
ENSMUSG00000072884 ENSMUST00000138678 0.175±0.12 0.331±0.00 0.085±0.00 N/A 0.187±0.09 0.237±0.12 0.051±0.02 0.212±0.09 0.192±0.10 0.241±0.06 0.048±0.01 0.230±0.11 0.274±0.00 0.204±0.05
ENSMUST00000146364 0.064±0.01 0.114±0.06 0.046±0.01 0.095±0.04 0.178±0.03 0.127±0.05 N/A 0.138±0.06 0.099±0.11 0.121±0.05 0.030±0.01 0.146±0.06 0.177±0.08 0.220±0.12
ENSMUSG00000096947 ENSMUST00000180771 N/A N/A N/A 79.161±3.41 N/A N/A 21.344±0.38 N/A N/A N/A 65.892±13.82 N/A N/A N/A

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