C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neural precursor cell expressed, developmentally down-regulated gene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021794 Nedd9-201 ENSMUSG00000021365 10090 - 13:41309916-41487320 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000021794
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000021794 1.891±0.62 1.096±0.45 0.156±0.00 6.669±1.66 1.960±0.35 3.129±1.16 1.025±0.82 8.564±1.13 0.364±0.21 1.605±0.20 0.141±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000385 CIL_000385_0002 CGP 13:41309916-41641347

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 IDA spindle pole
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0007067 IEA mitotic nuclear division
GO:0007155 IEA cell adhesion
GO:0040008 IEA regulation of growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379446 NEDD9-001 protein_coding Homo_sapiens 0 2789
ENST00000448183 NEDD9-008 nonsense_mediated_decay Homo_sapiens 0 2333
ENST00000504387 NEDD9-002 protein_coding Homo_sapiens 0 2750
ENST00000505589 NEDD9-015 retained_intron Homo_sapiens 0 399
ENST00000620854 NEDD9-201 protein_coding Homo_sapiens 0 2337

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