C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neural precursor cell expressed, developmentally down-regulated 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379446 NEDD9-001 ENSG00000111859 9606 - 6:11183298-11232682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379446
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379446 44.313±0.00 12.581±0.00 3.142±0.00 2.505±1.71 11.806±2.44 8.200±5.75 5.975±4.06 14.503±14.24 3.980±1.45 27.543±9.33 3.438±1.58 4.195±1.43 24.035±15.69 6.759±5.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000385 CIL_000385_0001 CGP 6:11183298-11583524

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 IEA spindle pole
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 TAS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005819 TAS spindle
GO:0007010 NAS cytoskeleton organization
GO:0007067 IEA mitotic nuclear division
GO:0007155 IEA cell adhesion
GO:0007165 TAS signal transduction
GO:0007229 NAS integrin-mediated signaling pathway
GO:0030054 IEA cell junction
GO:0040008 IEA regulation of growth
GO:0042995 IEA cell projection
GO:0051017 NAS actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163623 Nedd9-202 protein_coding Mus_musculus 0 2820
ENSMUST00000021794 Nedd9-201 protein_coding Mus_musculus 0 2789

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