C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000385_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111859-ENSG00000205269 CGP 9606 6:11183298-11583524
GeneTranscriptPositionBiotype
ENSG00000111859 (NEDD9)
neural precursor cell expressed, developmentally down-regulated 9 		ENST00000379433 (NEDD9-003) 11198308-11232658 protein_coding
ENST00000379446 (NEDD9-001) 11183298-11232682 protein_coding
ENST00000397378 (NEDD9-010) 11213644-11382299 protein_coding
ENST00000448183 (NEDD9-008) 11183306-11382314 nonsense_mediated_decay
ENST00000459670 (NEDD9-006) 11305066-11382306 processed_transcript
ENST00000461055 (NEDD9-004) 11328525-11382318 processed_transcript
ENST00000468612 (NEDD9-005) 11248933-11382338 retained_intron
ENST00000504387 (NEDD9-002) 11184818-11382348 protein_coding
ENST00000504634 (NEDD9-012) 11271446-11382332 processed_transcript
ENST00000505589 (NEDD9-015) 11190858-11192567 retained_intron
ENST00000508546 (NEDD9-007) 11213722-11382310 protein_coding
ENST00000508800 (NEDD9-009) 11352157-11382348 processed_transcript
ENST00000512665 (NEDD9-013) 11251264-11382272 retained_intron
ENST00000513989 (NEDD9-014) 11213633-11382303 protein_coding
ENST00000514660 (NEDD9-011) 11305853-11382308 retained_intron
ENST00000620854 (NEDD9-201) 11183301-11232682 protein_coding
ENSG00000202313 (RNU1-64P)
RNA, U1 small nuclear 64, pseudogene 		ENST00000365443 (RNU1-64P-201) 11503509-11503671 snRNA
ENSG00000205269 (TMEM170B)
transmembrane protein 170B 		ENST00000379426 (TMEM170B-001) 11538278-11583524 protein_coding
ENSG00000218020 (PRKRIRP5)
protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 5 		ENST00000405864 (PRKRIRP5-001) 11514192-11516466 transcribed_processed_pseudogene
ENSG00000233656 (RP11-716O23.1)
 ENST00000419796 (RP11-716O23.1-001) 11417350-11481239 lincRNA
ENSG00000242753 (RP11-716O23.2)
 ENST00000423149 (RP11-716O23.2-001) 11487226-11515710 lincRNA
CIL_000385_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021365-ENSMUSG00000087370 CGP 10090 13:41309916-41641347
GeneTranscriptPositionBiotype
ENSMUSG00000021365 (Nedd9)
neural precursor cell expressed, developmentally down-regulated gene 9 		ENSMUST00000021794 (Nedd9-201) 41309916-41487320 protein_coding
ENSMUST00000163623 (Nedd9-202) 41309916-41359001 protein_coding
ENSMUSG00000087370 (Tmem170b)
transmembrane protein 170B 		ENSMUST00000129449 (Tmem170b-201) 41606216-41641347 protein_coding
ENSMUSG00000092835 (Gm24819)
predicted gene, 24819 		ENSMUST00000175094 (Gm24819-201) 41577909-41578074 snRNA
ENSMUSG00000097373 (Gm26877)
predicted gene, 26877 		ENSMUST00000180728 (Gm26877-201) 41359971-41370908 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000385_0001ENSG00000111859ENST00000379433ENST00000379446ENST00000397378ENST00000448183ENST00000459670ENST00000461055ENST00000468612ENST00000504387ENST00000504634ENST00000505589ENST00000508546ENST00000508800ENST00000512665ENST00000513989ENST00000514660ENST00000620854ENSG00000202313ENST00000365443ENSG00000205269ENST00000379426ENSG00000218020ENST00000405864ENSG00000233656ENST00000419796ENSG00000242753ENST00000423149CIL_000385_0002ENSMUSG00000021365ENSMUST00000021794ENSMUST00000163623ENSMUSG00000087370ENSMUST00000129449ENSMUSG00000092835ENSMUST00000175094ENSMUSG00000097373ENSMUST00000180728
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000385_0001ENSG00000111859ENST00000379433ENST00000379446ENST00000504387ENST00000620854ENSG00000202313ENST00000365443ENSG00000205269ENST00000379426ENSG00000218020ENST00000405864ENSG00000233656ENST00000419796ENSG00000242753ENST00000423149CIL_000385_0002ENSMUSG00000021365ENSMUST00000021794ENSMUST00000163623ENSMUSG00000087370ENSMUST00000129449ENSMUSG00000092835ENSMUST00000175094ENSMUSG00000097373ENSMUST00000180728
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111859 ENST00000379433 N/A N/A 1.352±0.00 N/A N/A N/A 0.677±0.00 N/A 1.671±0.00 4.043±0.00 1.288±0.00 2.684±0.00 N/A N/A
ENST00000379446 44.313±0.00 12.581±0.00 3.142±0.00 2.505±1.71 11.806±2.44 8.200±5.75 5.975±4.06 14.503±14.24 3.980±1.45 27.543±9.33 3.438±1.58 4.195±1.43 24.035±15.69 6.759±5.40
ENST00000397378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504387 15.695±0.00 5.223±0.00 N/A N/A N/A N/A N/A N/A N/A 54.718±0.00 3.101±0.00 6.146±0.00 12.200±0.00 N/A
ENST00000504634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620854 N/A N/A N/A N/A N/A N/A N/A N/A 1.195±0.00 N/A N/A N/A 11.385±0.00 N/A
ENSG00000202313 ENST00000365443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.600±0.00 N/A
ENSG00000205269 ENST00000379426 2.016±0.00 0.655±0.00 1.371±0.00 6.904±0.88 0.866±0.44 0.901±0.05 0.881±0.08 2.513±1.05 1.717±0.60 1.171±0.15 1.206±0.47 0.519±0.24 0.538±0.34 2.276±0.56
ENSG00000218020 ENST00000405864 N/A N/A N/A 0.013±0.00 0.015±0.00 N/A 0.007±0.00 N/A N/A N/A N/A N/A N/A 0.118±0.11
ENSG00000233656 ENST00000419796 N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.091±0.00 2.389±0.76
ENSG00000242753 ENST00000423149 N/A N/A N/A N/A 0.104±0.00 N/A N/A N/A N/A 0.056±0.00 N/A N/A 0.063±0.00 0.545±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021365 ENSMUST00000021794 1.891±0.62 1.096±0.45 N/A 0.156±0.00 6.669±1.66 N/A 1.960±0.35 3.129±1.16 1.025±0.82 8.564±1.13 0.364±0.21 1.605±0.20 N/A 0.141±0.02
ENSMUST00000163623 12.047±2.52 5.943±0.68 5.908±1.12 3.674±1.93 5.806±0.77 31.073±2.26 4.522±0.40 9.621±2.66 1.236±1.37 28.536±2.76 1.404±0.29 12.839±2.09 4.788±3.27 0.984±0.28
ENSMUSG00000087370 ENSMUST00000129449 2.193±0.12 2.520±0.84 1.537±0.69 4.968±1.03 2.235±0.70 1.659±0.66 2.204±0.13 1.849±0.40 2.097±0.79 3.144±0.58 3.264±0.53 2.271±0.68 1.808±0.40 0.803±0.35
ENSMUSG00000092835 ENSMUST00000175094 N/A N/A N/A N/A N/A N/A N/A N/A N/A 116.260±0.00 N/A 3.453±0.00 N/A N/A
ENSMUSG00000097373 ENSMUST00000180728 0.247±0.17 0.214±0.00 0.102±0.05 0.107±0.01 0.224±0.10 N/A 0.154±0.06 0.089±0.03 0.085±0.03 0.166±0.06 0.066±0.02 0.232±0.09 0.062±0.06 1.032±0.37

Loading