C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIO kinase 1 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021866 Riok1-201 ENSMUSG00000021428 10090 + 13:38036989-38061433 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021866
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021866 4.844±1.22 3.654±0.85 7.945±0.84 9.154±0.90 3.330±0.85 4.176±0.62 2.058±0.49 2.715±0.49 5.297±3.68 6.141±1.06 1.823±0.25 6.905±4.43 15.101±6.54 8.683±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000817 CIL_000817_0002 VISTA 13:37577817-38179534
CIL_0007T6 CIL_0007T6_0002 VISTA 13:37870525-38472280
CIL_00004W CIL_00004W_0002 CGP 13:37971401-38037069
CIL_00004Q CIL_00004Q_0002 CGP 13:38006052-38061433
CIL_00037Y CIL_00037Y_0002 CGP 13:38036989-38198577

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006468 IEA protein phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264874 RIOK1-002 retained_intron Homo_sapiens 0 1066
ENST00000379834 RIOK1-001 protein_coding Homo_sapiens 0 1572
ENST00000484626 RIOK1-004 retained_intron Homo_sapiens 0 392
ENST00000493691 RIOK1-005 retained_intron Homo_sapiens 0 187

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