C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00037Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124784-ENSG00000096696 CGP 9606 6:7389496-7586717
GeneTranscriptPositionBiotype
ENSG00000096696 (DSP)
desmoplakin 		ENST00000379802 (DSP-001) 7541575-7586717 protein_coding
ENST00000418664 (DSP-002) 7541617-7586572 protein_coding
ENST00000506617 (DSP-007) 7559286-7565817 retained_intron
ENSG00000124784 (RIOK1)
RIO kinase 1 		ENST00000264874 (RIOK1-002) 7396752-7418037 retained_intron
ENST00000379834 (RIOK1-001) 7389496-7418037 protein_coding
ENST00000475351 (RIOK1-003) 7389793-7402848 nonsense_mediated_decay
ENST00000484626 (RIOK1-004) 7403934-7405184 retained_intron
ENST00000493691 (RIOK1-005) 7410378-7411567 retained_intron
ENSG00000219993 (RP11-288G3.3)
 ENST00000405131 (RP11-288G3.3-001) 7506203-7506549 processed_pseudogene
ENSG00000233503 (HNRNPLP1)
heterogeneous nuclear ribonucleoprotein L pseudogene 1 		ENST00000421896 (HNRNPLP1-001) 7481094-7482594 processed_pseudogene
ENSG00000234115 (RP11-288G3.4)
 ENST00000440581 (RP11-288G3.4-001) 7516600-7517840 processed_pseudogene
ENSG00000261189 (RP3-512B11.3)
 ENST00000561592 (RP3-512B11.3-001) 7540451-7541338 antisense
CIL_00037Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021428-ENSMUSG00000054889 CGP 10090 13:38036989-38198577
GeneTranscriptPositionBiotype
ENSMUSG00000021428 (Riok1)
RIO kinase 1 (yeast) 		ENSMUST00000021866 (Riok1-201) 38036989-38061433 protein_coding
ENSMUSG00000044566 (Cage1)
cancer antigen 1 		ENSMUST00000074969 (Cage1-201) 38006054-38036937 protein_coding
ENSMUST00000089840 (Cage1-003) 38020911-38037069 protein_coding
ENSMUST00000110233 (Cage1-001) 38006052-38036923 protein_coding
ENSMUST00000131066 (Cage1-002) 38023231-38036937 protein_coding
ENSMUSG00000054889 (Dsp)
desmoplakin 		ENSMUST00000124830 (Dsp-001) 38151348-38198577 protein_coding
ENSMUST00000127906 (Dsp-002) 38151328-38198577 protein_coding
ENSMUST00000145151 (Dsp-003) 38178367-38182234 processed_transcript
ENSMUSG00000098481 (Gm27387)
predicted gene, 27387 		ENSMUST00000184583 (Gm27387-201) 38086202-38086317 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00037Y_0001ENSG00000096696ENST00000379802ENST00000418664ENST00000506617ENSG00000124784ENST00000264874ENST00000379834ENST00000475351ENST00000484626ENST00000493691ENSG00000219993ENST00000405131ENSG00000233503ENST00000421896ENSG00000234115ENST00000440581ENSG00000261189ENST00000561592CIL_00037Y_0002ENSMUSG00000021428ENSMUST00000021866ENSMUSG00000044566ENSMUST00000074969ENSMUST00000089840ENSMUST00000110233ENSMUST00000131066ENSMUSG00000054889ENSMUST00000124830ENSMUST00000127906ENSMUST00000145151ENSMUSG00000098481ENSMUST00000184583
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00037Y_0001ENSG00000096696ENST00000379802ENST00000418664ENSG00000124784ENST00000264874ENST00000379834ENSG00000219993ENST00000405131ENSG00000233503ENST00000421896ENSG00000234115ENST00000440581ENSG00000261189ENST00000561592CIL_00037Y_0002ENSMUSG00000021428ENSMUST00000021866ENSMUSG00000044566ENSMUST00000074969ENSMUST00000089840ENSMUST00000110233ENSMUSG00000054889ENSMUST00000124830ENSMUST00000127906ENSMUSG00000098481ENSMUST00000184583
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000096696 ENST00000379802 2.029±0.00 1.523±0.00 5.676±0.00 0.703±0.15 6.228±1.94 9.006±6.89 38.793±27.34 8.843±1.07 3.949±1.15 4.071±0.79 0.094±0.04 18.391±18.51 21.175±11.85 1.308±0.77
ENST00000418664 0.957±0.00 1.097±0.00 2.407±0.00 0.451±0.00 5.712±2.04 6.646±1.90 25.533±0.00 5.930±1.61 3.819±3.24 3.427±0.00 0.201±0.00 4.314±2.83 12.975±2.38 0.364±0.00
ENST00000506617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000124784 ENST00000264874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.739±0.00 N/A N/A N/A
ENST00000379834 N/A 9.723±0.00 N/A N/A N/A 6.568±0.00 N/A N/A N/A N/A 5.861±0.00 10.653±6.27 8.404±1.80 26.693±6.33
ENST00000475351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000219993 ENST00000405131 N/A 0.234±0.00 N/A N/A 0.122±0.00 0.057±0.00 0.056±0.00 N/A N/A 0.228±0.00 0.053±0.00 N/A N/A 0.115±0.01
ENSG00000233503 ENST00000421896 0.012±0.00 0.013±0.00 N/A N/A 0.070±0.06 0.013±0.00 N/A 0.013±0.00 0.044±0.03 N/A 0.045±0.00 N/A N/A 0.024±0.00
ENSG00000234115 ENST00000440581 N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A
ENSG00000261189 ENST00000561592 0.129±0.00 0.175±0.00 N/A 0.017±0.00 0.125±0.00 0.376±0.03 4.784±4.39 0.874±0.00 1.207±0.00 0.303±0.00 0.057±0.00 0.324±0.16 0.960±0.32 0.471±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021428 ENSMUST00000021866 4.844±1.22 3.654±0.85 7.945±0.84 9.154±0.90 3.330±0.85 4.176±0.62 2.058±0.49 2.715±0.49 5.297±3.68 6.141±1.06 1.823±0.25 6.905±4.43 15.101±6.54 8.683±1.27
ENSMUSG00000044566 ENSMUST00000074969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 50.992±0.00
ENSMUST00000089840 N/A 0.662±0.05 N/A N/A N/A 0.584±0.00 0.201±0.00 N/A 0.292±0.11 N/A N/A 1.142±0.32 N/A N/A
ENSMUST00000110233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.584±6.54
ENSMUST00000131066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054889 ENSMUST00000124830 0.623±0.43 0.089±0.04 5.527±0.84 0.306±0.07 0.565±0.23 8.203±1.41 25.617±2.69 1.193±0.06 1.446±0.43 3.550±1.86 0.078±0.00 3.918±4.18 29.269±20.46 0.063±0.00
ENSMUST00000127906 0.970±0.92 0.384±0.18 3.066±0.29 0.364±0.23 1.932±0.73 19.123±1.94 24.306±1.07 1.201±0.52 1.331±0.79 4.751±1.76 0.050±0.06 3.387±2.07 19.093±11.91 0.211±0.03
ENSMUST00000145151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098481 ENSMUST00000184583 N/A N/A 37.516±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading