C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine palmitoyltransferase, long chain base subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021920 Sptlc1-201 ENSMUSG00000021468 10090 - 13:53332716-53377365 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021920
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021920 10.800±2.26 22.435±1.74 13.941±1.87 7.652±1.43 11.469±0.85 13.221±1.51 4.256±0.30 13.773±3.20 6.407±1.63 15.461±1.20 3.801±0.61 12.913±2.47 17.759±5.51 5.993±2.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JG CIL_0002JG_0002 CGP 13:53109312-53377365
CIL_00086T CIL_00086T_0002 VISTA 13:53163203-53764849

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004758 IEA serine C-palmitoyltransferase activity
GO:0005515 IPI protein binding
GO:0006686 IMP sphingomyelin biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0017059 ISA serine C-palmitoyltransferase complex
GO:0030170 IEA pyridoxal phosphate binding
GO:0035339 ISS SPOTS complex
GO:0046511 IMP sphinganine biosynthetic process
GO:0046512 IMP sphingosine biosynthetic process
GO:0046513 IMP ceramide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262554 SPTLC1-001 protein_coding Homo_sapiens 0 1428
ENST00000482632 SPTLC1-006 processed_transcript Homo_sapiens 0 318

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