C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002JG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169071-ENSG00000090054 CGP 9606 9:91563091-92115384
GeneTranscriptPositionBiotype
ENSG00000090054 (SPTLC1)
serine palmitoyltransferase, long chain base subunit 1 		ENST00000262554 (SPTLC1-001) 92031999-92115376 protein_coding
ENST00000337841 (SPTLC1-002) 92079061-92115383 protein_coding
ENST00000461132 (SPTLC1-005) 92108160-92115338 processed_transcript
ENST00000469778 (SPTLC1-008) 92032354-92038458 processed_transcript
ENST00000477888 (SPTLC1-007) 92079853-92108768 processed_transcript
ENST00000482632 (SPTLC1-006) 92059179-92115384 processed_transcript
ENST00000488921 (SPTLC1-004) 92107801-92115382 processed_transcript
ENSG00000169071 (ROR2)
receptor tyrosine kinase-like orphan receptor 2 		ENST00000375708 (ROR2-001) 91722597-91950162 protein_coding
ENST00000375715 (ROR2-002) 91563091-91948880 protein_coding
ENST00000476440 (ROR2-005) 91923653-91949906 processed_transcript
ENST00000493846 (ROR2-004) 91923668-91948715 processed_transcript
ENST00000495386 (ROR2-003) 91757334-91948676 processed_transcript
ENST00000546883 (ROR2-007) 91757436-91948741 processed_transcript
ENST00000548585 (ROR2-008) 91755940-91775781 retained_intron
ENST00000550066 (ROR2-006) 91722602-91887199 processed_transcript
ENSG00000227321 (MTND4P15)
MT-ND4 pseudogene 15 		ENST00000437913 (MTND4P15-001) 92110865-92111897 unprocessed_pseudogene
ENSG00000227399 (RP11-118F2.2)
 ENST00000422570 (RP11-118F2.2-001) 92006062-92006544 processed_pseudogene
ENSG00000228069 (RP11-100G15.3)
 ENST00000432119 (RP11-100G15.3-001) 92109013-92110095 unprocessed_pseudogene
ENSG00000228595 (PAICSP2)
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 2 		ENST00000429118 (PAICSP2-001) 91611343-91612492 processed_pseudogene
ENSG00000232179 (RP11-100G15.2)
 ENST00000415057 (RP11-100G15.2-001) 92108858-92108989 unprocessed_pseudogene
ENSG00000238288 (RP11-100G15.4)
 ENST00000431980 (RP11-100G15.4-001) 92110168-92110514 unprocessed_pseudogene
ENSG00000240791 (RP11-100G15.5)
 ENST00000431728 (RP11-100G15.5-001) 92110575-92110868 unprocessed_pseudogene
ENSG00000275756 (RP11-100G15.12)
 ENST00000618526 (RP11-100G15.12-001) 92104425-92105451 processed_pseudogene
CIL_0002JG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021464-ENSMUSG00000021468 CGP 10090 13:53109312-53377365
GeneTranscriptPositionBiotype
ENSMUSG00000021464 (Ror2)
receptor tyrosine kinase-like orphan receptor 2 		ENSMUST00000021918 (Ror2-001) 53109317-53286124 protein_coding
ENSMUST00000130235 (Ror2-002) 53109312-53285549 protein_coding
ENSMUST00000149299 (Ror2-003) 53131960-53275658 processed_transcript
ENSMUSG00000021468 (Sptlc1)
serine palmitoyltransferase, long chain base subunit 1 		ENSMUST00000021920 (Sptlc1-201) 53332716-53377365 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002JG_0001ENSG00000090054ENST00000262554ENST00000337841ENST00000461132ENST00000469778ENST00000477888ENST00000482632ENST00000488921ENSG00000169071ENST00000375708ENST00000375715ENST00000476440ENST00000493846ENST00000495386ENST00000546883ENST00000548585ENST00000550066ENSG00000227321ENST00000437913ENSG00000227399ENST00000422570ENSG00000228069ENST00000432119ENSG00000228595ENST00000429118ENSG00000232179ENST00000415057ENSG00000238288ENST00000431980ENSG00000240791ENST00000431728ENSG00000275756ENST00000618526CIL_0002JG_0002ENSMUSG00000021464ENSMUST00000021918ENSMUST00000130235ENSMUST00000149299ENSMUSG00000021468ENSMUST00000021920
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002JG_0001ENSG00000090054ENST00000262554ENST00000469778ENSG00000169071ENST00000375708ENST00000375715ENST00000495386ENST00000550066ENSG00000227321ENST00000437913ENSG00000227399ENST00000422570ENSG00000228069ENST00000432119ENSG00000228595ENST00000429118ENSG00000232179ENST00000415057ENSG00000238288ENST00000431980ENSG00000240791ENST00000431728ENSG00000275756ENST00000618526CIL_0002JG_0002ENSMUSG00000021464ENSMUST00000021918ENSMUST00000130235ENSMUSG00000021468ENSMUST00000021920
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000090054 ENST00000262554 5.313±0.00 N/A 5.364±0.00 3.179±0.25 1.860±0.00 1.684±0.00 N/A 1.852±0.00 2.973±0.00 6.539±0.00 2.347±0.00 20.758±12.48 25.431±0.00 20.156±0.00
ENST00000337841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 55.214±0.00 29.601±0.00 34.674±0.00
ENST00000477888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169071 ENST00000375708 0.587±0.00 0.753±0.00 0.105±0.00 0.158±0.12 1.077±0.13 8.027±7.71 0.122±0.09 1.141±0.00 2.647±0.00 2.306±1.77 0.047±0.03 9.765±5.76 4.112±0.58 6.389±3.02
ENST00000375715 0.112±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495386 N/A N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550066 N/A N/A N/A 0.041±0.00 N/A N/A N/A 0.156±0.00 0.077±0.00 N/A N/A N/A N/A N/A
ENSG00000227321 ENST00000437913 0.163±0.00 0.246±0.00 0.692±0.00 0.197±0.02 0.277±0.12 0.096±0.00 0.078±0.04 0.476±0.25 0.030±0.00 1.352±0.00 N/A 0.684±0.79 0.203±0.17 0.403±0.36
ENSG00000227399 ENST00000422570 0.027±0.00 0.056±0.00 N/A 0.057±0.00 0.195±0.00 0.312±0.00 N/A 0.055±0.00 N/A 0.026±0.00 0.025±0.00 0.049±0.00 N/A 0.048±0.00
ENSG00000228069 ENST00000432119 0.082±0.00 0.404±0.00 N/A 0.034±0.00 0.396±0.00 N/A 0.193±0.18 0.800±0.00 0.343±0.00 N/A N/A 0.498±0.42 0.324±0.00 0.774±0.00
ENSG00000228595 ENST00000429118 N/A N/A N/A N/A N/A 0.225±0.00 N/A N/A N/A N/A N/A N/A N/A 0.039±0.00
ENSG00000232179 ENST00000415057 N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A N/A 9.030±0.00 0.755±0.00 5.360±0.00
ENSG00000238288 ENST00000431980 N/A 0.171±0.00 N/A 0.175±0.00 N/A 0.718±0.00 0.217±0.00 N/A N/A N/A N/A 0.784±0.35 0.204±0.00 1.010±0.00
ENSG00000240791 ENST00000431728 N/A 0.196±0.00 N/A 0.164±0.00 0.182±0.00 N/A N/A 0.153±0.00 N/A N/A N/A 2.277±1.16 N/A N/A
ENSG00000275756 ENST00000618526 N/A 0.041±0.00 0.252±0.00 0.103±0.00 N/A 0.209±0.00 N/A N/A N/A N/A N/A 0.113±0.02 N/A 1.521±1.43
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021464 ENSMUST00000021918 6.795±6.25 2.464±0.58 3.152±0.21 1.168±0.01 1.904±0.73 6.245±1.29 0.478±0.10 1.642±0.45 0.096±0.05 1.296±0.53 0.135±0.00 4.413±1.88 1.115±0.34 0.281±0.08
ENSMUST00000130235 0.515±0.02 1.829±0.45 N/A 0.133±0.00 0.985±0.51 2.272±1.18 0.293±0.00 0.605±0.00 0.056±0.04 0.720±0.00 0.085±0.03 1.607±0.54 0.452±0.08 0.820±0.17
ENSMUST00000149299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000021468 ENSMUST00000021920 10.800±2.26 22.435±1.74 13.941±1.87 7.652±1.43 11.469±0.85 13.221±1.51 4.256±0.30 13.773±3.20 6.407±1.63 15.461±1.20 3.801±0.61 12.913±2.47 17.759±5.51 5.993±2.57

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