C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine palmitoyltransferase, long chain base subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262554 SPTLC1-001 ENSG00000090054 9606 - 9:92031999-92115376 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262554
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262554 5.313±0.00 5.364±0.00 3.179±0.25 1.860±0.00 1.684±0.00 1.852±0.00 2.973±0.00 6.539±0.00 2.347±0.00 20.758±12.48 25.431±0.00 20.156±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JG CIL_0002JG_0001 CGP 9:91563091-92115384

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004758 IDA serine C-palmitoyltransferase activity
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0006686 IEA sphingomyelin biosynthetic process
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0017059 IDA serine C-palmitoyltransferase complex
GO:0030148 TAS sphingolipid biosynthetic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0035339 IDA SPOTS complex
GO:0044281 TAS small molecule metabolic process
GO:0046511 IEA sphinganine biosynthetic process
GO:0046512 IEA sphingosine biosynthetic process
GO:0046513 IEA ceramide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021920 Sptlc1-201 protein_coding Mus_musculus 0 1428

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