C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022062 Sdha-001 ENSMUSG00000021577 10090 - 13:74322254-74350280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022062
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022062 142.947±20.21 116.620±27.16 68.496±1.30 56.895±15.37 157.396±36.12 73.951±23.92 389.847±8.40 265.442±36.64 109.951±38.38 58.208±5.89 239.596±12.15 89.917±9.22 56.381±19.40 32.186±10.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JD CIL_0000JD_0002 CGP 13:74322254-74365783

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000104 ISS succinate dehydrogenase activity
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005743 ISS mitochondrial inner membrane
GO:0005749 ISS mitochondrial respiratory chain complex II
GO:0006099 IEA tricarboxylic acid cycle
GO:0006105 ISS succinate metabolic process
GO:0007399 IEA nervous system development
GO:0008177 IEA succinate dehydrogenase (ubiquinone) activity
GO:0022904 ISS respiratory electron transport chain
GO:0050660 IEA flavin adenine dinucleotide binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000015559 sdha-001 protein_coding Danio_rerio 0 924
ENSDART00000081754 sdha-201 protein_coding Danio_rerio 0 857
ENST00000264932 SDHA-001 protein_coding Homo_sapiens 0 2241
ENST00000354559 SDHAP1-007 processed_transcript Homo_sapiens 5e-34 148
ENST00000413474 SDHAP1-005 processed_transcript Homo_sapiens 0 207
ENST00000414207 AC024560.3-005 processed_transcript Homo_sapiens 0 767
ENST00000418868 AC024560.3-001 processed_transcript Homo_sapiens 0 767
ENST00000427841 SDHAP1-002 processed_transcript Homo_sapiens 0 1105
ENST00000435731 SDHAP1-004 processed_transcript Homo_sapiens 0 231
ENST00000437008 AC024560.3-006 processed_transcript Homo_sapiens 0 374
ENST00000440535 AC024560.3-002 processed_transcript Homo_sapiens 5e-36 156
ENST00000440850 SDHAP1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1919
ENST00000449003 AC024560.3-004 retained_intron Homo_sapiens 0 767
ENST00000454517 AC024560.3-003 transcribed_unprocessed_pseudogene Homo_sapiens 0 767
ENST00000455183 SDHAP2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1925
ENST00000457601 SDHAP1-006 retained_intron Homo_sapiens 0 483
ENST00000502379 SDHA-011 retained_intron Homo_sapiens 0 287
ENST00000503674 SDHA-005 retained_intron Homo_sapiens 0 488
ENST00000504309 SDHA-002 protein_coding Homo_sapiens 0 1753
ENST00000504824 SDHA-009 retained_intron Homo_sapiens 0 1448
ENST00000505555 SDHA-003 retained_intron Homo_sapiens 0 2036
ENST00000507522 SDHA-019 processed_transcript Homo_sapiens 8e-37 158
ENST00000509420 SDHA-015 retained_intron Homo_sapiens 0 436
ENST00000509564 SDHA-018 protein_coding Homo_sapiens 5e-39 165
ENST00000509632 SDHA-010 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000510361 SDHA-004 protein_coding Homo_sapiens 0 1777
ENST00000511810 SDHA-006 retained_intron Homo_sapiens 0 806
ENST00000514027 SDHA-008 retained_intron Homo_sapiens 0 1541
ENST00000515467 SDHAP3-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 723
ENST00000515752 SDHA-007 retained_intron Homo_sapiens 0 806
ENST00000617470 SDHA-201 protein_coding Homo_sapiens 0 1304

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