C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysophosphatidylcholine acyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022099 Lpcat1-001 ENSMUSG00000021608 10090 + 13:73467197-73516422 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022099
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022099 9.284±5.04 15.885±1.92 6.104±0.08 21.943±2.99 18.345±7.50 10.741±2.89 1.874±0.51 4.563±0.63 18.624±21.72 207.948±56.45 0.659±0.13 14.001±6.46 8.857±1.78 0.567±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q6 CIL_0008Q6_0002 VISTA 13:72998274-73600313
CIL_0003AA CIL_0003AA_0002 CGP 13:73331009-73516422

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005811 IEA lipid particle
GO:0008654 IDA phospholipid biosynthetic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0036151 IEA phosphatidylcholine acyl-chain remodeling
GO:0043129 IDA surfactant homeostasis
GO:0045732 IDA positive regulation of protein catabolic process
GO:0047159 IDA 1-alkenylglycerophosphocholine O-acyltransferase activity
GO:0047184 IDA 1-acylglycerophosphocholine O-acyltransferase activity
GO:0047191 IDA 1-alkylglycerophosphocholine O-acyltransferase activity
GO:0047192 IEA 1-alkylglycerophosphocholine O-acetyltransferase activity
GO:0060041 IMP retina development in camera-type eye
GO:2001246 IDA negative regulation of phosphatidylcholine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283415 LPCAT1-002 protein_coding Homo_sapiens 0 1478
ENST00000475622 LPCAT1-001 nonsense_mediated_decay Homo_sapiens 0 1478
ENST00000507282 LPCAT1-006 retained_intron Homo_sapiens 0 451
ENST00000513757 LPCAT1-008 retained_intron Homo_sapiens 0 475
ENST00000514484 LPCAT1-004 processed_transcript Homo_sapiens 0 599
ENST00000611696 AYTL2-201 protein_coding Homo_sapiens 0 1306

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