C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterile alpha motif domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372690 SAMD8-002 ENSG00000156671 9606 + 10:75111471-75176831 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000372690
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000372690 3.422±0.00 9.907±0.00 6.029±0.00 5.565±0.00 5.149±0.00 1.295±0.00 8.394±0.00 6.089±0.00 10.729±0.00 8.687±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0001 UCNEbase 10:74418410-76978156
CIL_0008UO CIL_0008UO_0001 VISTA 10:74941035-75542526
CIL_000925 CIL_000925_0001 VISTA 10:74961440-75563087
CIL_0006DL CIL_0006DL_0002 CGP 10:75037836-75109221
CIL_00084B CIL_00084B_0001 VISTA 10:75078488-75679926
CIL_0007IJ CIL_0007IJ_0001 CGP 10:75094432-75182123
CIL_0007IK CIL_0007IK_0001 CGP 10:75099586-75231448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0006686 NAS sphingomyelin biosynthetic process
GO:0016021 NAS integral component of membrane
GO:0016740 IEA transferase activity
GO:0030176 IDA integral component of endoplasmic reticulum membrane
GO:0046513 IDA ceramide biosynthetic process
GO:2000303 IDA regulation of ceramide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022292 Samd8-001 protein_coding Mus_musculus 0 1895
ENSMUST00000119430 Samd8-003 protein_coding Mus_musculus 0 1783
ENSMUST00000144061 Samd8-002 nonsense_mediated_decay Mus_musculus 0 1783
ENSMUST00000142023 Samd8-004 retained_intron Mus_musculus 0 239

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