C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterile alpha motif domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372687 SAMD8-001 ENSG00000156671 9606 + 10:75111709-75182123 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000372687
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000372687 0.912±0.00 1.452±0.63 0.475±0.06 0.588±0.00 1.075±0.00 0.776±0.00 2.691±0.00 0.422±0.00 0.800±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0001 UCNEbase 10:74418410-76978156
CIL_0008UO CIL_0008UO_0001 VISTA 10:74941035-75542526
CIL_000925 CIL_000925_0001 VISTA 10:74961440-75563087
CIL_0006DL CIL_0006DL_0002 CGP 10:75037836-75109221
CIL_00084B CIL_00084B_0001 VISTA 10:75078488-75679926
CIL_0007IJ CIL_0007IJ_0001 CGP 10:75094432-75182123
CIL_0007IK CIL_0007IK_0001 CGP 10:75099586-75231448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000144061 Samd8-002 nonsense_mediated_decay Mus_musculus 0 1354
ENSMUST00000119430 Samd8-003 protein_coding Mus_musculus 0 1273
ENSMUST00000022292 Samd8-001 protein_coding Mus_musculus 0 1273
ENSMUST00000142023 Samd8-004 retained_intron Mus_musculus 0.00000002 68

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