C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD1 homolog (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022856 Rad1-001 ENSMUSG00000022248 10090 + 15:10486018-10493689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022856
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022856 5.078±1.99 5.723±1.10 7.766±2.05 7.052±4.77 4.203±0.97 3.942±1.19 2.627±0.57 6.049±0.95 7.942±5.82 5.560±0.52 2.518±0.43 4.716±2.21 3.626±2.81 5.579±0.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 IEA DNA damage checkpoint
GO:0000738 IEA DNA catabolic process, exonucleolytic
GO:0005515 IEA protein binding
GO:0005654 IEA nucleoplasm
GO:0005694 IEA chromosome
GO:0006281 IEA DNA repair
GO:0008408 ISS 3'-5' exonuclease activity
GO:0008853 IEA exodeoxyribonuclease III activity
GO:0021762 IEA substantia nigra development
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0051598 IEA meiotic recombination checkpoint
GO:0071479 IEA cellular response to ionizing radiation
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231383 RAD1P1-001 processed_pseudogene Homo_sapiens 0 723
ENST00000325577 RAD1-002 nonsense_mediated_decay Homo_sapiens 0 636
ENST00000341754 RAD1-003 protein_coding Homo_sapiens 0 965
ENST00000382038 RAD1-001 protein_coding Homo_sapiens 0 965
ENST00000506311 RAD1-004 retained_intron Homo_sapiens 0 213
ENST00000511456 RAD1-006 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000513914 RAD1-005 nonsense_mediated_decay Homo_sapiens 0 760

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