C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD1 checkpoint DNA exonuclease
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341754 RAD1-003 ENSG00000113456 9606 - 5:34908172-34918989 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryENST00000341754
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000341754 2.350±0.00 1.098±0.00 1.152±0.00 1.503±0.00 1.860±0.00 1.576±0.00 1.146±0.00 2.298±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 IMP DNA damage checkpoint
GO:0000738 IEA DNA catabolic process, exonucleolytic
GO:0003684 TAS damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 IDA nucleoplasm
GO:0005694 IDA chromosome
GO:0006260 TAS DNA replication
GO:0006281 IEA DNA repair
GO:0006974 TAS cellular response to DNA damage stimulus
GO:0008408 IDA 3'-5' exonuclease activity
GO:0008853 IEA exodeoxyribonuclease III activity
GO:0021762 IEP substantia nigra development
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0051598 IGI meiotic recombination checkpoint
GO:0071479 IDA cellular response to ionizing radiation
GO:0090305 IDA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022856 Rad1-001 protein_coding Mus_musculus 0 965
ENSMUST00000170100 Rad1-006 nonsense_mediated_decay Mus_musculus 0 754
ENSMUST00000100775 Rad1-003 protein_coding Mus_musculus 0 754
ENSMUST00000170531 Rad1-002 retained_intron Mus_musculus 0 640
ENSMUST00000168408 Rad1-004 nonsense_mediated_decay Mus_musculus 0 636
ENSMUST00000169519 Rad1-005 protein_coding Mus_musculus 0 449

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