C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD1 homolog (S. pombe)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022248 Rad1 10090 + 15:10486018-10499063 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022856 Rad1-001 10486018-10493689 protein_coding
  ENSMUST00000100775 Rad1-003 10486069-10499063 protein_coding
  ENSMUST00000168408 Rad1-004 10486475-10493363 nonsense_mediated_decay
  ENSMUST00000169519 Rad1-005 10486080-10490347 protein_coding
  ENSMUST00000170100 Rad1-006 10486609-10493674 nonsense_mediated_decay
  ENSMUST00000170531 Rad1-002 10486049-10493684 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022856ENSMUST00000100775ENSMUST00000168408ENSMUST00000169519ENSMUST00000170100ENSMUST00000170531
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022856 5.078±1.99 5.723±1.10 7.766±2.05 7.052±4.77 4.203±0.97 3.942±1.19 2.627±0.57 6.049±0.95 7.942±5.82 5.560±0.52 2.518±0.43 4.716±2.21 3.626±2.81 5.579±0.39
ENSMUST00000100775 0.390±0.08 0.887±0.25 1.938±0.00 0.391±0.11 0.431±0.17 0.425±0.16 0.212±0.02 0.346±0.00 0.331±0.06 0.604±0.19 N/A 1.124±0.58 0.192±0.06 0.707±0.08
ENSMUST00000168408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.136±0.74 4.049±1.44 N/A
ENSMUST00000169519 N/A 2.002±0.00 N/A N/A 1.762±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170100 N/A N/A N/A 1.389±0.00 N/A N/A N/A N/A N/A N/A 0.849±0.00 3.560±0.77 2.050±0.37 0.653±0.00
ENSMUST00000170531 N/A N/A N/A 0.533±0.38 0.509±0.00 0.305±0.03 N/A N/A 1.068±0.06 0.312±0.00 0.108±0.00 0.344±0.12 0.102±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000077 IEA DNA damage checkpoint
GO:0000738 IEA DNA catabolic process, exonucleolytic
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005694 IEA chromosome
GO:0006281 IEA DNA repair
GO:0008408 ISS 3'-5' exonuclease activity
GO:0008853 IEA exodeoxyribonuclease III activity
GO:0021762 IEA substantia nigra development
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0051598 IEA meiotic recombination checkpoint
GO:0071479 IEA cellular response to ionizing radiation
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040559 rad1 RAD1 homolog (S. pombe) protein_coding Danio_rerio
ENSG00000113456 RAD1 RAD1 checkpoint DNA exonuclease protein_coding Homo_sapiens

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