C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 38, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023101 Slc38a4-201 ENSMUSG00000022464 10090 - 15:96994823-97055956 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023101
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023101 1.115±0.87 0.673±0.44 1.902±0.09 1.307±0.04 4.055±0.74 0.308±0.14 1.971±0.37 0.678±0.33 25.715±14.53 0.978±0.34 19.926±7.59 2.660±1.28 53.964±20.97 0.054±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YP CIL_0005YP_0002 CGP 15:96994823-97247287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005886 IEA plasma membrane
GO:0006814 IEA sodium ion transport
GO:0015171 IEA amino acid transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266579 SLC38A4-002 protein_coding Homo_sapiens 0 1471
ENST00000440085 SLC38A5-004 protein_coding Homo_sapiens 0.0000000006 69
ENST00000447411 SLC38A4-001 protein_coding Homo_sapiens 0 1471
ENST00000494034 SLC38A5-008 nonsense_mediated_decay Homo_sapiens 0.0000000003 69
ENST00000546940 SLC38A4-003 protein_coding Homo_sapiens 0 599
ENST00000547477 SLC38A4-004 protein_coding Homo_sapiens 0 680
ENST00000550670 SLC38A4-005 protein_coding Homo_sapiens 9e-30 134
ENST00000595796 SLC38A5-011 protein_coding Homo_sapiens 0.000000002 69
ENST00000619100 SLC38A5-012 protein_coding Homo_sapiens 0.000000001 69
ENST00000620913 SLC38A5-201 protein_coding Homo_sapiens 0.000000001 69
ENST00000622196 SLC38A5-202 protein_coding Homo_sapiens 0.000000001 69

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