C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein particle complex 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023276 Trappc9-201 ENSMUSG00000047921 10090 - 15:72589621-73055812 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverMuscleOvaryPlacentaENSMUST00000023276
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Muscle Ovary Placenta
ENSMUST00000023276 9.063±0.78 1.847±0.09 4.080±0.16 3.115±0.94 3.657±0.46 1.064±0.53 4.687±1.45 4.074±1.14 1.239±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Q0 CIL_0004Q0_0002 CGP 15:72512119-73061204
CIL_0002Y5 CIL_0002Y5_0002 CGP 15:72589621-73097554

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389328 TRAPPC9-001 protein_coding Homo_sapiens 0 2795
ENST00000438773 TRAPPC9-002 protein_coding Homo_sapiens 0 2795
ENST00000520857 TRAPPC9-003 protein_coding Homo_sapiens 0 2473
ENST00000521167 TRAPPC9-006 processed_transcript Homo_sapiens 0 416
ENST00000521667 TRAPPC9-004 processed_transcript Homo_sapiens 0 1646
ENST00000523777 TRAPPC9-010 processed_transcript Homo_sapiens 0 588
ENST00000524162 TRAPPC9-011 processed_transcript Homo_sapiens 0 481

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