C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) III beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023465 Top3b-001 ENSMUSG00000022779 10090 + 16:16870781-16892990 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLungMuscleOvaryPlacentaENSMUST00000023465
Transcript ID Adrenal Lung Muscle Ovary Placenta
ENSMUST00000023465 3.488±0.27 3.806±0.00 1.202±0.31 4.609±0.00 3.970±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PT CIL_0008PT_0002 VISTA 16:16870677-17470725

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000793 IDA condensed chromosome
GO:0003677 IEA DNA binding
GO:0003917 IEA DNA topoisomerase type I activity
GO:0005634 IEA nucleus
GO:0006265 IEA DNA topological change
GO:0007059 IMP chromosome segregation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357179 TOP3B-001 protein_coding Homo_sapiens 0 2918
ENST00000398793 TOP3B-003 protein_coding Homo_sapiens 0 2918
ENST00000420768 TOP3BP1-001 processed_pseudogene Homo_sapiens 0 499
ENST00000424393 TOP3B-012 protein_coding Homo_sapiens 0 891
ENST00000430142 TOP3B-007 protein_coding Homo_sapiens 0 424
ENST00000436282 TOP3B-005 nonsense_mediated_decay Homo_sapiens 0 1053
ENST00000437929 TOP3B-013 protein_coding Homo_sapiens 0 425
ENST00000444502 TOP3B-002 nonsense_mediated_decay Homo_sapiens 0 1561
ENST00000457179 TOP3B-004 nonsense_mediated_decay Homo_sapiens 0 1454
ENST00000457270 TOP3B-006 protein_coding Homo_sapiens 0 1720

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