C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 1, group I, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023504 Nr1i2-001 ENSMUSG00000022809 10090 - 16:38248323-38294824 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000023504
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000023504 0.017±0.01 0.041±0.02 0.009±0.01 0.008±0.00 0.085±0.05 19.187±1.93 0.029±0.03 3.089±0.25 11.489±6.65 0.236±0.11 0.714±0.31 0.290±0.06 0.130±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 ISS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006805 ISS xenobiotic metabolic process
GO:0008144 ISS drug binding
GO:0008270 IEA zinc ion binding
GO:0010628 IMP positive regulation of gene expression
GO:0030522 IEA intracellular receptor signaling pathway
GO:0042738 ISS exogenous drug catabolic process
GO:0042908 ISS xenobiotic transport
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0045892 ISO negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046618 ISS drug export

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337940 NR1I2-001 protein_coding Homo_sapiens 0 1203
ENST00000393716 NR1I2-002 protein_coding Homo_sapiens 0 1214
ENST00000466380 NR1I2-003 protein_coding Homo_sapiens 0 662
ENST00000474090 NR1I2-004 retained_intron Homo_sapiens 0 370
ENST00000493757 NR1I2-005 retained_intron Homo_sapiens 0 845

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