C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 1, group I, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000337940 NR1I2-001 ENSG00000144852 9606 + 3:119782710-119818485 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLiverLungOvaryENST00000337940
Transcript ID Adipose Adrenal Breast Heart Kidney Liver Lung Ovary
ENST00000337940 0.006±0.00 0.064±0.00 0.623±0.00 0.008±0.00 1.059±1.00 7.751±0.00 0.019±0.00 0.030±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BS CIL_0005BS_0002 CGP 3:119703022-119818485
CIL_0005BP CIL_0005BP_0002 CGP 3:119780484-120094417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 TAS transcription coactivator activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006805 IDA xenobiotic metabolic process
GO:0007165 TAS signal transduction
GO:0008144 IDA drug binding
GO:0008202 TAS steroid metabolic process
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0010628 IEA positive regulation of gene expression
GO:0030522 IDA intracellular receptor signaling pathway
GO:0042738 IDA exogenous drug catabolic process
GO:0042908 IDA xenobiotic transport
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046618 IDA drug export

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023504 Nr1i2-001 protein_coding Mus_musculus 0 1203
ENSDART00000061525 nr1i2-202 protein_coding Danio_rerio 8e-23 113
ENSDART00000123247 nr1i2-203 protein_coding Danio_rerio 8e-23 113
ENSDART00000017326 nr1i2-201 protein_coding Danio_rerio 8e-23 113
ENSDART00000125174 nr1i2-001 protein_coding Danio_rerio 8e-23 113

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