C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein S23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024486 Mrps23-001 ENSMUSG00000023723 10090 + 11:88204388-88211507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024486
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024486 14.941±1.22 20.665±8.11 26.048±0.41 22.008±9.94 16.884±6.93 24.510±3.04 64.829±7.50 31.654±2.67 16.289±4.74 14.222±1.13 38.778±8.24 15.427±5.77 16.870±8.76 6.634±2.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DL CIL_0009DL_0002 VISTA 11:87880548-88481652
CIL_0009DM CIL_0009DM_0002 VISTA 11:87974079-88576075
CIL_0007PL CIL_0007PL_0002 UCNEbase 11:88049942-88585488
CIL_0007R8 CIL_0007R8_0002 VISTA 11:88167358-88768721

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 ISS structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005763 ISS mitochondrial small ribosomal subunit
GO:0006412 IEA translation
GO:0031965 IEA nuclear membrane
GO:0044822 IEA poly(A) RNA binding
GO:0045111 IEA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313608 MRPS23-001 protein_coding Homo_sapiens 0 429
ENST00000440356 AC004854.5-001 processed_pseudogene Homo_sapiens 0 200
ENST00000578444 MRPS23-004 protein_coding Homo_sapiens 0 433

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