C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shugoshin-like 1 (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024736 Sgol1-001 ENSMUSG00000023940 10090 - 17:53674786-53689333 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024736
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024736 0.282±0.30 0.046±0.00 0.256±0.00 1.353±0.95 0.141±0.05 0.620±0.32 0.019±0.01 0.051±0.04 7.237±5.94 0.132±0.06 0.016±0.01 1.321±0.73 4.026±3.75 0.353±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HV CIL_0004HV_0002 CGP 17:53566861-53689333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0000776 ISS kinetochore
GO:0000779 IEA condensed chromosome, centromeric region
GO:0000780 IDA condensed nuclear chromosome, centromeric region
GO:0000922 ISO spindle pole
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 ISS centrosome
GO:0007059 ISS chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0008608 ISS attachment of spindle microtubules to kinetochore
GO:0010457 ISS centriole-centriole cohesion
GO:0019900 ISO kinase binding
GO:0030892 IEA mitotic cohesin complex
GO:0045132 ISO meiotic chromosome segregation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263753 SGOL1-009 protein_coding Homo_sapiens 0 462
ENST00000306698 SGOL1-001 protein_coding Homo_sapiens 0 200
ENST00000412997 SGOL1-002 protein_coding Homo_sapiens 0 460
ENST00000417364 SGOL1-004 protein_coding Homo_sapiens 0 198
ENST00000419233 SGOL1-005 protein_coding Homo_sapiens 0 200
ENST00000421451 SGOL1-010 protein_coding Homo_sapiens 0 462
ENST00000425061 SGOL1-006 protein_coding Homo_sapiens 0 200
ENST00000437051 SGOL1-003 protein_coding Homo_sapiens 0 198
ENST00000442720 SGOL1-012 protein_coding Homo_sapiens 0 198
ENST00000452020 SGOL1-015 protein_coding Homo_sapiens 0 200
ENST00000460637 SGOL1-017 processed_transcript Homo_sapiens 0 198

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