C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024778 Med20-001 ENSMUSG00000092558 10090 + 17:47611582-47624418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024778 19.424±2.17 21.073±1.14 18.540±3.48 15.599±6.55 19.281±1.86 15.694±1.83 8.863±0.38 14.586±1.24 15.978±4.13 15.423±1.68 10.806±0.95 18.721±2.63 17.558±4.52 4.809±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000963 CIL_000963_0002 VISTA 17:47571879-48173076
CIL_0006L5 CIL_0006L5_0002 CGP 17:47599331-47624418

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001104 IEA RNA polymerase II transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0016592 IDA mediator complex
GO:0035914 IMP skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265350 MED20-001 protein_coding Homo_sapiens 0 896
ENST00000394251 MED20-004 protein_coding Homo_sapiens 0 595
ENST00000409060 MED20-003 protein_coding Homo_sapiens 0 588
ENST00000409312 MED20-007 protein_coding Homo_sapiens 0 466
ENST00000467535 MED20-002 processed_transcript Homo_sapiens 0 688
ENST00000482361 MED20-006 processed_transcript Homo_sapiens 0 684
ENST00000613074 MED20-201 protein_coding Homo_sapiens 0 881

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