C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265350 MED20-001 ENSG00000124641 9606 - 6:41905354-41921099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265350
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265350 3.183±0.00 1.653±0.00 3.166±0.00 2.707±1.19 4.717±0.00 4.454±0.00 2.292±0.33 2.712±0.00 2.422±0.00 3.337±1.19 7.141±1.29 4.220±0.54

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001104 IEA RNA polymerase II transcription cofactor activity
GO:0003899 NAS DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 NAS transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA:TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016592 IEA:NAS mediator complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024778 Med20-001 protein_coding Mus_musculus 0 896
ENSMUST00000138638 Med20-003 retained_intron Mus_musculus 0 588
ENSMUST00000130830 Gm20517-003 retained_intron Mus_musculus 0 588
ENSMUST00000132397 Gm20517-001 nonsense_mediated_decay Mus_musculus 0 584
ENSMUST00000149893 Med20-002 retained_intron Mus_musculus 0 568
ENSMUST00000133855 Med20-004 retained_intron Mus_musculus 0 224
ENSMUST00000146105 Gm20517-002 retained_intron Mus_musculus 0 219

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