C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 49
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024779 Usp49-001 ENSMUSG00000090115 10090 + 17:47630690-47686738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024779
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024779 4.548±0.25 3.059±0.39 3.507±0.05 7.498±2.76 3.644±0.16 5.221±0.47 1.448±0.01 2.136±0.34 3.468±1.76 3.304±0.33 1.482±0.10 3.961±0.67 3.919±0.40 3.452±1.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000963 CIL_000963_0002 VISTA 17:47571879-48173076
CIL_0006L6 CIL_0006L6_0002 CGP 17:47611589-47686738
CIL_00093V CIL_00093V_0002 VISTA 17:47614773-48215356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016579 IEA protein deubiquitination
GO:0035616 ISS histone H2B conserved C-terminal lysine deubiquitination
GO:0042393 ISS histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373006 USP49-001 protein_coding Homo_sapiens 0 2471
ENST00000373009 USP49-201 protein_coding Homo_sapiens 0 2730
ENST00000373010 USP49-002 protein_coding Homo_sapiens 0 2191
ENST00000394253 USP49-007 protein_coding Homo_sapiens 0 2872
ENST00000423567 USP49-005 protein_coding Homo_sapiens 2e-33 147
ENST00000448078 USP49-004 nonsense_mediated_decay Homo_sapiens 0 619

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