C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 49
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373009 USP49-201 ENSG00000164663 9606 - 6:41789898-41871637 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonENST00000373009
Transcript ID Adipose Adrenal Brain Colon
ENST00000373009 0.690±0.00 1.388±0.00 0.539±0.00 0.454±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XI CIL_0008XI_0001 VISTA 6:41187113-41790491
CIL_00093V CIL_00093V_0001 VISTA 6:41255486-41855939
CIL_000963 CIL_000963_0001 VISTA 6:41292979-41894337
CIL_0001ZL CIL_0001ZL_0001 CGP 6:41780349-41790141

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IMP mRNA splicing, via spliceosome
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016579 IDA protein deubiquitination
GO:0035616 IDA histone H2B conserved C-terminal lysine deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042393 IDA histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024779 Usp49-001 protein_coding Mus_musculus 0 2730
ENSMUST00000132397 Gm20517-001 nonsense_mediated_decay Mus_musculus 0 2686
ENSMUST00000152724 Usp49-002 protein_coding Mus_musculus 0 1325
ENSMUST00000131550 Usp49-004 nonsense_mediated_decay Mus_musculus 0 619
ENSMUST00000145314 Usp49-003 protein_coding Mus_musculus 0 220

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