C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylinositol glycan anchor biosynthesis, class F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024957 Pigf-001 ENSMUSG00000024145 10090 - 17:86997256-87025406 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverOvaryPlacentaTestisENSMUST00000024957
Transcript ID Bladder Brain Kidney Liver Ovary Placenta Testis
ENSMUST00000024957 20.892±1.54 9.898±3.91 9.724±1.08 6.062±3.69 9.220±3.39 10.025±3.74 53.541±24.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NS CIL_0001NS_0002 CGP 17:86944109-87000069
CIL_0001ND CIL_0001ND_0002 CGP 17:86963082-87025406
CIL_0001NE CIL_0001NE_0002 CGP 17:86997256-87035810

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006506 IEA GPI anchor biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016780 TAS phosphotransferase activity, for other substituted phosphate groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238738 RHOQ-001 protein_coding Homo_sapiens 0 361
ENST00000281382 PIGF-001 protein_coding Homo_sapiens 0 1011
ENST00000306465 PIGF-002 protein_coding Homo_sapiens 0 647
ENST00000412717 PIGF-004 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000420164 PIGF-007 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000473428 RHOQ-007 nonsense_mediated_decay Homo_sapiens 0.000001 58
ENST00000482786 PIGF-005 processed_transcript Homo_sapiens 0 361
ENST00000495933 PIGF-003 processed_transcript Homo_sapiens 0 241
ENST00000519180 PIGFP1-001 processed_pseudogene Homo_sapiens 0 649
ENST00000614802 RP11-649E7.8-001 unprocessed_pseudogene Homo_sapiens 4e-37 156

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