C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THUMP domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025093 Thumpd2-201 ENSMUSG00000024246 10090 - 17:81026327-81065085 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025093
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025093 0.843±0.33 1.227±0.73 1.932±0.19 1.369±0.29 0.670±0.32 0.970±0.26 0.676±0.16 1.114±0.30 1.594±0.95 0.832±0.46 0.570±0.08 2.691±1.31 1.476±0.16 0.352±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066V CIL_00066V_0002 CGP 17:80944632-81065085
CIL_00066Z CIL_00066Z_0002 CGP 17:81026327-81649607

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378727 THUMPD2-002 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000460072 THUMPD2-004 retained_intron Homo_sapiens 0 431
ENST00000505747 THUMPD2-001 protein_coding Homo_sapiens 0 911
ENST00000530095 THUMPD2-009 retained_intron Homo_sapiens 0 289
ENST00000530522 THUMPD2-005 nonsense_mediated_decay Homo_sapiens 0 601

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