C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 175, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321945 FAM175A-001 ENSG00000163322 9606 - 4:83459517-83485181 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLungMuscleOvaryTestisENST00000321945
Transcript ID Adipose Bladder Breast Heart Kidney Lung Muscle Ovary Testis
ENST00000321945 1.650±0.00 0.889±0.00 0.825±0.00 0.906±0.00 0.604±0.19 0.588±0.00 1.988±0.00 2.868±0.09 2.321±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JA CIL_0006JA_0001 CGP 4:83407343-83469735
CIL_0006J9 CIL_0006J9_0001 CGP 4:83455932-83523348
CIL_0006J8 CIL_0006J8_0001 CGP 4:83459517-83605875

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006302 IMP double-strand break repair
GO:0010212 IMP response to ionizing radiation
GO:0016568 IEA chromatin modification
GO:0031572 IMP G2 DNA damage checkpoint
GO:0031593 IDA polyubiquitin binding
GO:0045739 IMP positive regulation of DNA repair
GO:0070531 IDA BRCA1-A complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117364 Fam175a-006 protein_coding Mus_musculus 0 852
ENSMUST00000055245 Fam175a-001 protein_coding Mus_musculus 0 852
ENSMUST00000044535 Fam175a-003 nonsense_mediated_decay Mus_musculus 0 654
ENSMUST00000145707 Fam175a-004 retained_intron Mus_musculus 0 248
ENSMUST00000112901 Mrps18c-002 protein_coding Mus_musculus 2e-40 172
ENSMUST00000143477 Mrps18c-005 retained_intron Mus_musculus 5e-27 128
ENSMUST00000112898 Mrps18c-004 protein_coding Mus_musculus 5e-27 128
ENSMUST00000016977 Mrps18c-001 protein_coding Mus_musculus 5e-27 128
ENSMUST00000160654 Gm15946-001 processed_pseudogene Mus_musculus 1e-23 117
ENSMUST00000122080 Gm14237-001 processed_pseudogene Mus_musculus 1e-23 117
ENSMUST00000078259 Nsl1-001 protein_coding Mus_musculus 0.00000000006 75
ENSMUST00000025106 Polr2d-201 protein_coding Mus_musculus 0.0000005 62

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