C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation termination factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025218 Etf1-001 ENSMUSG00000024360 10090 - 18:34902785-34932007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025218
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025218 18.522±2.37 15.379±2.35 24.490±2.87 18.928±2.49 14.202±2.18 13.111±1.43 13.251±0.55 14.783±1.46 19.255±7.96 15.554±0.96 24.003±0.84 20.275±8.84 58.988±31.50 23.809±4.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DC CIL_0005DC_0002 CGP 18:34859823-34932007
CIL_0005DB CIL_0005DB_0002 CGP 18:34902785-34954357

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006415 IEA translational termination
GO:0006479 ISO protein methylation
GO:0016032 IEA viral process
GO:0016149 IEA translation release factor activity, codon specific
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360541 ETF1-001 protein_coding Homo_sapiens 0 4748
ENST00000417770 ETF1P1-001 processed_pseudogene Homo_sapiens 0 1253
ENST00000421220 ETF1P1-001 processed_pseudogene Homo_sapiens 0 1254
ENST00000423254 ETF1P1-001 processed_pseudogene Homo_sapiens 0 1254
ENST00000427296 ETF1P1-001 processed_pseudogene Homo_sapiens 0 1249
ENST00000430422 ETF1P3-001 processed_pseudogene Homo_sapiens 0 1410
ENST00000436392 ETF1P1-001 processed_pseudogene Homo_sapiens 0 1249
ENST00000447559 ETF1P1-001 processed_pseudogene Homo_sapiens 0 1254
ENST00000452822 ETF1P1-001 processed_pseudogene Homo_sapiens 0 1254
ENST00000458260 ETF1P1-001 processed_pseudogene Homo_sapiens 0 1249
ENST00000478788 ETF1P2-001 processed_pseudogene Homo_sapiens 0 1517
ENST00000499810 ETF1-002 protein_coding Homo_sapiens 0 4268
ENST00000503014 ETF1-003 protein_coding Homo_sapiens 0 2362
ENST00000503183 ETF1-007 retained_intron Homo_sapiens 0 616
ENST00000506345 ETF1-004 retained_intron Homo_sapiens 0 869
ENST00000507939 ETF1-006 protein_coding Homo_sapiens 0 571
ENST00000512198 ETF1-008 nonsense_mediated_decay Homo_sapiens 0 636
ENST00000514005 ETF1-005 processed_transcript Homo_sapiens 0 501
ENST00000572514 ETF1-009 protein_coding Homo_sapiens 0 994

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