C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025311 Pcdh12-201 ENSMUSG00000024440 10090 - 18:38267092-38284401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025311 3.666±0.40 3.444±0.36 0.158±0.04 0.871±0.74 2.595±0.56 1.016±0.15 2.978±0.29 3.713±0.27 0.744±0.27 8.407±0.44 0.952±0.28 1.623±0.30 11.464±5.74 0.064±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QF CIL_0006QF_0002 CGP 18:38250249-38284401
CIL_0006QG CIL_0006QG_0002 CGP 18:38267092-38317847

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 ISS integral component of plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005977 IMP glycogen metabolic process
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016339 IDA calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0060711 IMP labyrinthine layer development
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231484 PCDH12-001 protein_coding Homo_sapiens 0 3142

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