C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231484 PCDH12-001 ENSG00000113555 9606 - 5:141943585-141959062 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonOvaryENST00000231484
Transcript ID Colon Ovary
ENST00000231484 1.055±0.00 1.427±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QF CIL_0006QF_0001 CGP 5:141923808-141969741
CIL_0006QG CIL_0006QG_0001 CGP 5:141943585-141990291

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005977 IEA glycogen metabolic process
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008038 TAS neuron recognition
GO:0016020 IEA membrane
GO:0016339 IEA calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0060711 IEA labyrinthine layer development
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025311 Pcdh12-201 protein_coding Mus_musculus 0 3142

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