C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006QG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000113555-ENSG00000013561 CGP 9606 5:141943585-141990291
GeneTranscriptPositionBiotype
ENSG00000013561 (RNF14)
ring finger protein 14 		ENST00000347642 (RNF14-201) 141968886-141990290 protein_coding
ENST00000356143 (RNF14-202) 141966837-141990290 protein_coding
ENST00000394514 (RNF14-002) 141969111-141989185 protein_coding
ENST00000394519 (RNF14-203) 141966837-141990290 protein_coding
ENST00000394520 (RNF14-001) 141969039-141990291 protein_coding
ENST00000502341 (RNF14-009) 141969104-141978762 processed_transcript
ENST00000506004 (RNF14-008) 141969269-141973634 protein_coding
ENST00000506822 (RNF14-004) 141958337-141978394 protein_coding
ENST00000506938 (RNF14-010) 141969105-141978509 protein_coding
ENST00000507163 (RNF14-006) 141969157-141978553 protein_coding
ENST00000507291 (RNF14-007) 141969277-141974833 protein_coding
ENST00000511961 (RNF14-003) 141958328-141978830 protein_coding
ENST00000512565 (RNF14-013) 141969136-141984933 protein_coding
ENST00000513019 (RNF14-005) 141966820-141974947 protein_coding
ENST00000514620 (RNF14-011) 141969095-141980277 processed_transcript
ENST00000515613 (RNF14-012) 141969151-141983552 nonsense_mediated_decay
ENSG00000113555 (PCDH12)
protocadherin 12 		ENST00000231484 (PCDH12-001) 141943585-141959062 protein_coding
ENST00000510041 (PCDH12-003) 141957781-141958812 protein_coding
ENST00000512221 (PCDH12-004) 141958037-141969741 processed_transcript
ENSG00000271871 (AC005740.6)
 ENST00000607378 (AC005740.6-001) 141952419-141953375 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006QG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024440-ENSMUSG00000060450 CGP 10090 18:38267092-38317847
GeneTranscriptPositionBiotype
ENSMUSG00000024440 (Pcdh12)
protocadherin 12 		ENSMUST00000025311 (Pcdh12-201) 38267092-38284401 protein_coding
ENSMUSG00000060450 (Rnf14)
ring finger protein 14 		ENSMUST00000072376 (Rnf14-201) 38296635-38317847 protein_coding
ENSMUST00000170811 (Rnf14-202) 38296635-38317847 protein_coding
ENSMUST00000171461 (Rnf14-203) 38296805-38317847 protein_coding
ENSMUSG00000089296 (Gm23205)
predicted gene, 23205 		ENSMUST00000158671 (Gm23205-201) 38297939-38298041 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006QG_0001ENSG00000013561ENST00000347642ENST00000356143ENST00000394514ENST00000394519ENST00000394520ENST00000502341ENST00000506004ENST00000506822ENST00000506938ENST00000507163ENST00000507291ENST00000511961ENST00000512565ENST00000513019ENST00000514620ENST00000515613ENSG00000113555ENST00000231484ENST00000510041ENST00000512221ENSG00000271871ENST00000607378CIL_0006QG_0002ENSMUSG00000024440ENSMUST00000025311ENSMUSG00000060450ENSMUST00000072376ENSMUST00000170811ENSMUST00000171461ENSMUSG00000089296ENSMUST00000158671
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006QG_0001ENSG00000013561ENST00000347642ENST00000356143ENST00000394514ENST00000394520ENST00000506938ENST00000507163ENST00000515613ENSG00000113555ENST00000231484ENSG00000271871ENST00000607378CIL_0006QG_0002ENSMUSG00000024440ENSMUST00000025311ENSMUSG00000060450ENSMUST00000072376ENSMUST00000170811ENSMUST00000171461ENSMUSG00000089296ENSMUST00000158671
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000013561 ENST00000347642 N/A 1.071±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000356143 N/A N/A N/A N/A N/A N/A N/A 0.802±0.00 N/A N/A N/A N/A N/A N/A
ENST00000394514 6.460±0.00 5.091±0.00 5.307±0.00 6.686±4.09 5.390±1.31 4.033±1.54 8.120±1.15 5.603±0.16 4.374±2.44 4.189±0.00 3.707±0.43 4.837±2.31 13.478±4.48 22.571±17.14
ENST00000394519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.124±0.00 N/A N/A
ENST00000502341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.343±1.30 N/A N/A N/A
ENST00000507163 N/A N/A N/A N/A N/A N/A N/A 6.124±0.00 N/A N/A N/A N/A N/A N/A
ENST00000507291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.037±0.00 41.929±0.00 108.131±0.00
ENSG00000113555 ENST00000231484 N/A N/A N/A N/A N/A 1.055±0.00 N/A N/A N/A N/A N/A 1.427±0.58 N/A N/A
ENST00000510041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271871 ENST00000607378 0.166±0.00 0.389±0.00 0.576±0.00 0.170±0.00 0.094±0.02 0.148±0.00 0.200±0.02 0.140±0.00 0.332±0.00 1.008±0.08 N/A 0.241±0.10 0.170±0.03 0.138±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024440 ENSMUST00000025311 3.666±0.40 3.444±0.36 0.158±0.04 0.871±0.74 2.595±0.56 1.016±0.15 2.978±0.29 3.713±0.27 0.744±0.27 8.407±0.44 0.952±0.28 1.623±0.30 11.464±5.74 0.064±0.03
ENSMUSG00000060450 ENSMUST00000072376 11.990±4.18 12.604±3.52 16.999±0.19 47.127±3.29 16.144±6.53 9.991±3.27 15.099±4.15 14.318±6.90 7.881±1.65 7.545±2.06 9.432±4.70 15.024±2.19 25.398±1.33 6.461±2.01
ENSMUST00000170811 5.789±0.84 4.519±0.82 12.826±1.44 8.840±1.75 5.152±1.30 4.212±0.66 5.549±1.18 5.139±1.04 7.076±2.38 9.431±2.84 8.209±1.39 7.283±3.24 22.409±12.35 3.461±0.34
ENSMUST00000171461 2.511±0.00 8.523±2.37 N/A N/A 3.828±1.43 2.697±0.68 N/A 3.538±0.98 N/A 2.707±0.49 N/A 4.488±0.89 N/A 3.118±0.48
ENSMUSG00000089296 ENSMUST00000158671 N/A N/A 364.301±0.00 117.177±0.00 N/A N/A N/A N/A 56.038±0.00 N/A N/A 161.571±0.00 46.976±23.23 169.487±0.00

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