C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serum response factor binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025406 Srfbp1-201 ENSMUSG00000024528 10090 + 18:52465693-52490738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025406
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025406 1.380±0.57 0.465±0.22 7.604±0.56 7.571±1.73 0.764±0.46 0.780±0.22 1.897±0.59 1.908±0.45 3.753±3.32 1.204±0.22 4.340±0.65 3.342±3.99 10.638±4.15 1.951±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004B3 CIL_0004B3_0002 CGP 18:52331536-52490738
CIL_0004B2 CIL_0004B2_0002 CGP 18:52465693-52529867

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339397 SRFBP1-001 protein_coding Homo_sapiens 0 448

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