C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004B2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000151304-ENSG00000113083 CGP 9606 5:121961961-122078285
GeneTranscriptPositionBiotype
ENSG00000113083 (LOX)
lysyl oxidase 		ENST00000231004 (LOX-001) 122063195-122078285 protein_coding
ENST00000503759 (LOX-003) 122065945-122077223 retained_intron
ENST00000505593 (LOX-005) 122065944-122076083 processed_transcript
ENST00000508067 (LOX-006) 122070520-122077472 nonsense_mediated_decay
ENST00000513319 (LOX-002) 122065797-122077174 processed_transcript
ENSG00000151304 (SRFBP1)
serum response factor binding protein 1 		ENST00000339397 (SRFBP1-001) 121961961-122028619 protein_coding
ENST00000504881 (SRFBP1-002) 122020530-122075570 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0004B2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024528-ENSMUSG00000024529 CGP 10090 18:52465693-52529867
GeneTranscriptPositionBiotype
ENSMUSG00000024528 (Srfbp1)
serum response factor binding protein 1 		ENSMUST00000025406 (Srfbp1-201) 52465693-52490738 protein_coding
ENSMUSG00000024529 (Lox)
lysyl oxidase 		ENSMUST00000025409 (Lox-201) 52517238-52529708 protein_coding
ENSMUST00000171470 (Lox-202) 52516069-52529867 protein_coding
ENSMUSG00000098000 (Gm27026)
predicted gene, 27026 		ENSMUST00000183003 (Gm27026-001) 52472848-52473739 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004B2_0001ENSG00000113083ENST00000231004ENST00000503759ENST00000505593ENST00000508067ENST00000513319ENSG00000151304ENST00000339397ENST00000504881CIL_0004B2_0002ENSMUSG00000024528ENSMUST00000025406ENSMUSG00000024529ENSMUST00000025409ENSMUST00000171470ENSMUSG00000098000ENSMUST00000183003
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004B2_0001ENSG00000113083ENST00000231004ENST00000503759ENSG00000151304ENST00000339397CIL_0004B2_0002ENSMUSG00000024528ENSMUST00000025406ENSMUSG00000024529ENSMUST00000025409ENSMUST00000171470ENSMUSG00000098000ENSMUST00000183003
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113083 ENST00000231004 15.429±0.00 1.061±0.00 N/A 0.609±0.00 15.581±0.00 6.569±0.00 1.385±0.00 3.536±0.00 0.528±0.32 4.677±3.98 0.321±0.00 1.850±1.55 1.781±0.55 1.535±1.14
ENST00000503759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.946±0.00 N/A
ENST00000505593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000151304 ENST00000339397 N/A 1.139±0.00 1.577±0.00 1.030±0.02 2.996±0.00 2.345±0.31 1.320±0.13 1.546±0.10 1.931±0.91 1.982±0.00 1.000±0.63 1.825±0.90 0.961±0.15 1.069±0.35
ENST00000504881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024528 ENSMUST00000025406 1.380±0.57 0.465±0.22 7.604±0.56 7.571±1.73 0.764±0.46 0.780±0.22 1.897±0.59 1.908±0.45 3.753±3.32 1.204±0.22 4.340±0.65 3.342±3.99 10.638±4.15 1.951±0.75
ENSMUSG00000024529 ENSMUST00000025409 26.955±5.98 6.732±1.05 2.560±0.38 1.321±1.38 21.342±10.84 5.577±1.23 1.166±0.42 2.643±1.06 0.360±0.30 24.982±8.98 N/A 26.646±12.14 1.524±0.99 0.321±0.20
ENSMUST00000171470 4.947±0.00 N/A 1.997±0.75 0.487±0.47 N/A 0.663±0.00 N/A 0.411±0.14 0.639±0.58 N/A 0.750±0.36 4.116±1.61 1.425±0.88 N/A
ENSMUSG00000098000 ENSMUST00000183003 0.113±0.07 0.103±0.00 0.072±0.00 0.059±0.00 0.187±0.03 N/A 0.104±0.00 0.092±0.04 0.080±0.04 0.130±0.05 N/A 0.222±0.12 0.071±0.00 0.149±0.04

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