C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serum response factor binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339397 SRFBP1-001 ENSG00000151304 9606 + 5:121961961-122028619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339397
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339397 1.139±0.00 1.577±0.00 1.030±0.02 2.996±0.00 2.345±0.31 1.320±0.13 1.546±0.10 1.931±0.91 1.982±0.00 1.000±0.63 1.825±0.90 0.961±0.15 1.069±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004B3 CIL_0004B3_0001 CGP 5:121851955-122075570
CIL_0004B2 CIL_0004B2_0001 CGP 5:121961961-122078285

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025406 Srfbp1-201 protein_coding Mus_musculus 0 448

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