C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEH1-like (S. cerevisiae
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025421 Seh1l-201 ENSMUSG00000079614 10090 + 18:67774876-67795461 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025421 16.034±4.71 49.628±1.12 16.190±0.18 10.256±6.86 15.136±5.36 19.050±3.78 4.809±0.75 17.313±1.11 18.701±3.36 20.665±3.97 1.181±0.29 28.861±12.57 14.967±6.45 3.231±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068W CIL_00068W_0002 CGP 18:67665511-67795461
CIL_0007Z8 CIL_0007Z8_0002 VISTA 18:67758776-68359713
CIL_0005NY CIL_0005NY_0002 CGP 18:67774876-67885168

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 ISS kinetochore
GO:0002534 IMP cytokine production involved in inflammatory response
GO:0003674 ND molecular_function
GO:0006999 ISS nuclear pore organization
GO:0007080 ISS mitotic metaphase plate congression
GO:0015031 IEA protein transport
GO:0031080 ISS nuclear pore outer ring
GO:0050830 IMP defense response to Gram-positive bacterium
GO:0051028 IEA mRNA transport
GO:0051315 ISS attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262124 SEH1L-001 protein_coding Homo_sapiens 0 1712
ENST00000399892 SEH1L-002 protein_coding Homo_sapiens 0 1354
ENST00000585730 SEH1L-007 protein_coding Homo_sapiens 0 351
ENST00000587761 SEH1L-008 protein_coding Homo_sapiens 0 673
ENST00000588251 SEH1L-009 processed_transcript Homo_sapiens 0 617
ENST00000589446 SEH1L-006 protein_coding Homo_sapiens 0 575
ENST00000590843 SEH1L-004 retained_intron Homo_sapiens 0 922
ENST00000592170 SEH1L-005 protein_coding Homo_sapiens 0 425
ENST00000592582 SEH1L-003 processed_transcript Homo_sapiens 0 865

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