C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00068W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175354-ENSG00000085415 CGP 9606 18:12785478-12987536
GeneTranscriptPositionBiotype
ENSG00000085415 (SEH1L)
SEH1-like (S. cerevisiae) 		ENST00000262124 (SEH1L-001) 12947995-12987536 protein_coding
ENST00000399892 (SEH1L-002) 12948021-12987536 protein_coding
ENST00000585730 (SEH1L-007) 12948014-12971252 protein_coding
ENST00000587761 (SEH1L-008) 12948048-12978860 protein_coding
ENST00000588251 (SEH1L-009) 12948505-12971249 processed_transcript
ENST00000589446 (SEH1L-006) 12948036-12971251 protein_coding
ENST00000590032 (SEH1L-010) 12978829-12983217 retained_intron
ENST00000590843 (SEH1L-004) 12976288-12987531 retained_intron
ENST00000592170 (SEH1L-005) 12947133-12955610 protein_coding
ENST00000592582 (SEH1L-003) 12971563-12985718 processed_transcript
ENSG00000175354 (PTPN2)
protein tyrosine phosphatase, non-receptor type 2 		ENST00000309660 (PTPN2-002) 12792153-12884235 protein_coding
ENST00000327283 (PTPN2-003) 12785478-12884338 protein_coding
ENST00000353319 (PTPN2-001) 12785483-12884281 protein_coding
ENST00000585666 (PTPN2-014) 12785506-12814305 protein_coding
ENST00000587497 (PTPN2-013) 12814197-12819000 processed_transcript
ENST00000587703 (PTPN2-012) 12785685-12836824 protein_coding
ENST00000589086 (PTPN2-009) 12836824-12862473 processed_transcript
ENST00000589216 (PTPN2-008) 12817181-12884198 nonsense_mediated_decay
ENST00000589444 (PTPN2-006) 12785478-12787741 retained_intron
ENST00000591115 (PTPN2-004) 12785481-12884214 protein_coding
ENST00000591305 (PTPN2-007) 12801989-12884222 nonsense_mediated_decay
ENST00000591497 (PTPN2-005) 12792302-12843981 protein_coding
ENST00000591901 (PTPN2-015) 12785481-12802153 protein_coding
ENST00000592059 (PTPN2-011) 12825804-12929643 protein_coding
ENST00000592776 (PTPN2-010) 12814325-12884277 nonsense_mediated_decay
ENSG00000267336 (RP11-773H22.2)
 ENST00000587313 (RP11-773H22.2-001) 12912844-12913906 processed_pseudogene
ENSG00000267570 (STK25P1)
serine/threonine kinase 25 pseudogene 1 		ENST00000585406 (STK25P1-001) 12911186-12912023 processed_pseudogene
CIL_00068W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024539-ENSMUSG00000079614 CGP 10090 18:67665511-67795461
GeneTranscriptPositionBiotype
ENSMUSG00000024539 (Ptpn2)
protein tyrosine phosphatase, non-receptor type 2 		ENSMUST00000025420 (Ptpn2-001) 67665512-67724588 protein_coding
ENSMUST00000120934 (Ptpn2-003) 67665511-67724573 protein_coding
ENSMUST00000122412 (Ptpn2-002) 67671212-67724595 protein_coding
ENSMUST00000128169 (Ptpn2-004) 67675818-67690224 processed_transcript
ENSMUSG00000079614 (Seh1l)
SEH1-like (S. cerevisiae 		ENSMUST00000025421 (Seh1l-201) 67774876-67795461 protein_coding
ENSMUSG00000097835 (Gm26910)
predicted gene, 26910 		ENSMUST00000180450 (Gm26910-201) 67773712-67774857 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00068W_0001ENSG00000085415ENST00000262124ENST00000399892ENST00000585730ENST00000587761ENST00000588251ENST00000589446ENST00000590032ENST00000590843ENST00000592170ENST00000592582ENSG00000175354ENST00000309660ENST00000327283ENST00000353319ENST00000585666ENST00000587497ENST00000587703ENST00000589086ENST00000589216ENST00000589444ENST00000591115ENST00000591305ENST00000591497ENST00000591901ENST00000592059ENST00000592776ENSG00000267336ENST00000587313ENSG00000267570ENST00000585406CIL_00068W_0002ENSMUSG00000024539ENSMUST00000025420ENSMUST00000120934ENSMUST00000122412ENSMUST00000128169ENSMUSG00000079614ENSMUST00000025421ENSMUSG00000097835ENSMUST00000180450
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00068W_0001ENSG00000085415ENST00000262124ENST00000399892ENST00000585730ENST00000587761ENST00000589446ENST00000590843ENST00000592582ENSG00000175354ENST00000309660ENST00000327283ENST00000587497ENST00000587703ENST00000589444ENST00000591115ENST00000591305ENST00000591497ENST00000591901ENST00000592776ENSG00000267336ENST00000587313ENSG00000267570ENST00000585406CIL_00068W_0002ENSMUSG00000024539ENSMUST00000025420ENSMUST00000120934ENSMUST00000122412ENSMUST00000128169ENSMUSG00000079614ENSMUST00000025421ENSMUSG00000097835ENSMUST00000180450
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000085415 ENST00000262124 6.311±0.00 3.856±0.00 1.382±0.00 4.414±2.50 2.069±0.00 2.763±0.66 0.495±0.30 1.849±0.00 2.394±0.89 2.241±1.26 N/A 4.579±1.42 3.101±0.80 2.206±0.38
ENST00000399892 4.203±0.00 8.821±0.00 4.416±0.00 8.077±4.62 6.406±0.81 5.728±1.51 2.764±1.65 3.400±1.85 3.716±0.63 4.746±0.04 9.153±6.90 8.389±3.36 4.015±1.32 5.850±0.88
ENST00000585730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.796±0.00 N/A N/A N/A
ENST00000587761 N/A N/A N/A N/A N/A N/A 0.607±0.00 N/A 3.162±0.00 N/A N/A N/A N/A N/A
ENST00000588251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589446 N/A N/A 6.243±0.00 N/A 9.150±0.00 N/A N/A 7.341±0.00 3.980±0.00 N/A N/A N/A N/A N/A
ENST00000590032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.279±0.00 N/A N/A N/A
ENST00000592170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592582 N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A 0.503±0.00 N/A N/A N/A N/A N/A
ENSG00000175354 ENST00000309660 0.807±0.00 N/A 0.405±0.00 1.041±0.37 1.370±0.61 0.433±0.00 0.483±0.12 1.140±0.00 0.477±0.00 1.215±0.15 N/A 1.097±0.05 0.452±0.05 1.217±0.00
ENST00000327283 3.697±0.00 N/A N/A 0.931±0.00 3.218±1.13 2.854±0.44 1.399±0.55 1.778±0.00 3.411±0.00 4.360±0.94 2.169±0.00 5.138±1.13 5.093±0.06 4.165±0.00
ENST00000353319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.814±0.00 N/A N/A N/A
ENST00000587703 7.897±0.00 N/A N/A N/A 4.865±0.00 6.481±0.00 0.724±0.00 10.183±0.00 3.227±0.00 7.881±0.00 2.092±1.37 8.579±0.00 N/A 8.527±0.00
ENST00000589086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589444 N/A 3.683±0.00 0.639±0.00 0.741±0.00 1.202±0.34 1.768±0.00 0.327±0.00 1.675±0.01 0.551±0.00 1.609±0.58 N/A 1.796±0.34 N/A N/A
ENST00000591115 N/A N/A 1.097±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591305 N/A N/A N/A 1.473±0.00 N/A N/A N/A N/A N/A N/A 2.065±0.00 N/A N/A N/A
ENST00000591497 N/A 2.276±0.00 N/A N/A N/A 0.885±0.00 N/A N/A 0.996±0.00 N/A N/A N/A N/A N/A
ENST00000591901 N/A 11.338±0.00 N/A N/A 2.621±0.00 2.420±0.00 N/A N/A N/A N/A 2.645±0.00 N/A N/A N/A
ENST00000592059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592776 N/A N/A N/A 1.943±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267336 ENST00000587313 0.021±0.00 0.412±0.00 N/A 0.149±0.00 0.468±0.00 0.019±0.00 0.019±0.00 0.073±0.00 N/A 0.047±0.00 N/A 0.112±0.00 0.116±0.07 0.335±0.00
ENSG00000267570 ENST00000585406 0.045±0.00 0.099±0.00 N/A N/A 0.178±0.00 N/A 0.052±0.00 N/A N/A N/A N/A 0.472±0.00 0.096±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024539 ENSMUST00000025420 1.624±0.62 1.395±0.55 4.864±0.72 3.689±0.68 1.542±0.21 2.421±0.68 1.288±0.17 1.316±0.52 5.436±4.07 1.910±0.00 2.887±0.59 2.694±2.49 15.753±4.02 2.380±0.40
ENSMUST00000120934 0.668±0.09 1.214±0.00 N/A 1.147±0.00 1.517±0.41 2.412±0.00 N/A 0.982±0.49 1.201±0.31 2.111±0.51 0.497±0.00 2.836±2.62 N/A 1.840±1.00
ENSMUST00000122412 0.750±0.27 0.747±0.26 0.875±0.07 1.845±1.23 0.804±0.23 0.843±0.56 0.466±0.10 0.529±0.07 1.032±0.34 0.936±0.32 0.638±0.15 1.156±0.44 2.276±0.11 1.089±0.11
ENSMUST00000128169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.614±0.06 N/A N/A
ENSMUSG00000079614 ENSMUST00000025421 16.034±4.71 49.628±1.12 16.190±0.18 10.256±6.86 15.136±5.36 19.050±3.78 4.809±0.75 17.313±1.11 18.701±3.36 20.665±3.97 1.181±0.29 28.861±12.57 14.967±6.45 3.231±1.37
ENSMUSG00000097835 ENSMUST00000180450 0.570±0.23 0.381±0.12 1.466±0.17 2.250±1.00 0.612±0.38 0.679±0.10 0.485±0.00 0.711±0.34 0.574±0.29 0.860±0.12 0.607±0.22 1.118±0.83 0.695±0.21 7.004±6.37

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