C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEH1-like (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399892 SEH1L-002 ENSG00000085415 9606 + 18:12948021-12987536 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399892 4.203±0.00 8.821±0.00 4.416±0.00 8.077±4.62 6.406±0.81 5.728±1.51 2.764±1.65 3.400±1.85 3.716±0.63 4.746±0.04 9.153±6.90 8.389±3.36 4.015±1.32 5.850±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068W CIL_00068W_0001 CGP 18:12785478-12987536
CIL_0005NY CIL_0005NY_0001 CGP 18:12947133-13125052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0002534 IEA cytokine production involved in inflammatory response
GO:0005515 IEA protein binding
GO:0005635 TAS nuclear envelope
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0006999 IMP nuclear pore organization
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0007080 IMP mitotic metaphase plate congression
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031080 NAS nuclear pore outer ring
GO:0044281 TAS small molecule metabolic process
GO:0050830 IEA defense response to Gram-positive bacterium
GO:0051028 IEA mRNA transport
GO:0051315 IMP attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025421 Seh1l-201 protein_coding Mus_musculus 0 1354
ENSMUST00000121283 Gm15780-001 processed_pseudogene Mus_musculus 0 617

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