C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, class I, type 8B, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025482 Atp8b1-201 ENSMUSG00000039529 10090 - 18:64528979-64661000 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025482
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025482 7.228±5.33 0.464±0.22 15.818±4.80 0.181±0.15 2.355±1.27 64.037±8.86 0.678±0.14 1.686±0.61 4.413±2.58 3.934±0.62 0.266±0.05 6.687±3.71 2.454±0.91 0.363±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006OE CIL_0006OE_0002 CGP 18:64499665-64661000
CIL_0006OF CIL_0006OF_0002 CGP 18:64528979-65217826

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0004012 IEA phospholipid-translocating ATPase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006855 IEA drug transmembrane transport
GO:0007605 IMP sensory perception of sound
GO:0008206 IMP bile acid metabolic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane
GO:0019829 IEA cation-transporting ATPase activity
GO:0021650 IMP vestibulocochlear nerve formation
GO:0031526 IEA brush border membrane
GO:0032420 IDA stereocilium
GO:0032534 IEA regulation of microvillus assembly
GO:0045332 IEA phospholipid translocation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0060119 IMP inner ear receptor cell development
GO:0098655 IEA cation transmembrane transport
GO:1901612 IDA cardiolipin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000137844 atp8b1-001 protein_coding Danio_rerio 0 496
ENSDART00000086492 atp8b1-201 protein_coding Danio_rerio 0 484
ENSDART00000109548 atp8b5b-201 protein_coding Danio_rerio 0 209
ENST00000283684 ATP8B1-001 protein_coding Homo_sapiens 0 4257
ENST00000536015 ATP8B1-201 protein_coding Homo_sapiens 0 4348
ENST00000585322 ATP8B1-006 protein_coding Homo_sapiens 3e-16 90
ENST00000588255 ATP8B1-003 protein_coding Homo_sapiens 0 381
ENST00000589147 ATP8B1-002 processed_transcript Homo_sapiens 0 518
ENST00000591728 ATP8B1-005 nonsense_mediated_decay Homo_sapiens 0 272

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