C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA C330018D20 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025488 C330018D20Rik-001 ENSMUSG00000024592 10090 - 18:56955833-56975368 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025488
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025488 2.252±0.16 0.811±0.23 3.985±0.43 2.493±0.47 1.357±0.37 1.018±0.37 2.561±0.47 1.988±0.31 3.408±1.82 1.077±0.32 2.358±0.48 1.126±0.51 2.146±1.03 1.322±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007S2 CIL_0007S2_0002 VISTA 18:56596918-57198991
CIL_00041K CIL_00041K_0002 CGP 18:56761716-56975368
CIL_0006CT CIL_0006CT_0003 CGP 18:56955833-57297467

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296662 C5orf63-201 protein_coding Homo_sapiens 0 475
ENST00000508527 C5orf63-002 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000509733 C5orf63-006 protein_coding Homo_sapiens 0 278
ENST00000515558 C5orf63-003 retained_intron Homo_sapiens 0 230
ENST00000535381 C5orf63-202 protein_coding Homo_sapiens 0 278
ENST00000606042 C5orf63-005 protein_coding Homo_sapiens 1e-22 110
ENST00000606937 C5orf63-004 protein_coding Homo_sapiens 0 222
ENST00000607731 C5orf63-001 protein_coding Homo_sapiens 0 278

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