C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007S2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm109 VISTA 9606 5:126699007-127301374
GeneTranscriptPositionBiotype
ENSG00000113368 (LMNB1)
lamin B1 		ENST00000261366 (LMNB1-001) 126777148-126837020 protein_coding
ENST00000395354 (LMNB1-003) 126777189-126819234 protein_coding
ENST00000460265 (LMNB1-002) 126776623-126837014 processed_transcript
ENST00000463908 (LMNB1-006) 126777379-126810255 processed_transcript
ENST00000472034 (LMNB1-004) 126777161-126818979 processed_transcript
ENST00000492190 (LMNB1-005) 126777161-126804914 processed_transcript
ENST00000494185 (LMNB1-007) 126811713-126821081 retained_intron
ENST00000504788 (LMNB1-009) 126777153-126836571 processed_transcript
ENST00000512460 (LMNB1-011) 126818928-126826109 retained_intron
ENSG00000145794 (MEGF10)
multiple EGF-like-domains 10 		ENST00000274473 (MEGF10-001) 127290859-127461222 protein_coding
ENST00000418761 (MEGF10-002) 127290847-127424604 protein_coding
ENST00000503335 (MEGF10-004) 127290831-127461222 protein_coding
ENST00000506709 (MEGF10-007) 127422692-127440847 processed_transcript
ENST00000507158 (MEGF10-012) 127445477-127449202 retained_intron
ENST00000508365 (MEGF10-003) 127290846-127424781 protein_coding
ENST00000510513 (MEGF10-011) 127444413-127445544 retained_intron
ENST00000510828 (MEGF10-009) 127445252-127455562 processed_transcript
ENST00000515002 (MEGF10-006) 127409592-127417669 processed_transcript
ENST00000515622 (MEGF10-013) 127447628-127465737 processed_transcript
ENSG00000164241 (C5orf63)
chromosome 5 open reading frame 63 		ENST00000296662 (C5orf63-201) 127051304-127073492 protein_coding
ENST00000508527 (C5orf63-002) 127045359-127073480 nonsense_mediated_decay
ENST00000509733 (C5orf63-006) 127052382-127073492 protein_coding
ENST00000515558 (C5orf63-003) 127058753-127073389 retained_intron
ENST00000535381 (C5orf63-202) 127042558-127073492 protein_coding
ENST00000606042 (C5orf63-005) 127051612-127058917 protein_coding
ENST00000606937 (C5orf63-004) 127047527-127071623 protein_coding
ENST00000607731 (C5orf63-001) 127051304-127073467 protein_coding
ENSG00000173926 (MARCH3)
membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase 		ENST00000308660 (MARCH3-001) 126867714-127030808 protein_coding
ENST00000502289 (MARCH3-003) 126914931-127030169 processed_transcript
ENST00000504239 (MARCH3-005) 126898873-126914990 processed_transcript
ENST00000506088 (MARCH3-006) 126870191-126878397 retained_intron
ENST00000515241 (MARCH3-002) 126914661-126918228 protein_coding
ENSG00000249768 (HSPE1P10)
heat shock 10kDa protein 1 pseudogene 10 		ENST00000508631 (HSPE1P10-001) 126737438-126737995 processed_pseudogene
ENSG00000250956 (CTB-88F18.3)
 ENST00000509908 (CTB-88F18.3-001) 127179756-127179900 processed_pseudogene
ENSG00000251072 (RP11-434D11.4)
 ENST00000509185 (RP11-434D11.4-001) 126751963-126776486 lincRNA
ENSG00000252185 (RNU6-752P)
RNA, U6 small nuclear 752, pseudogene 		ENST00000516376 (RNU6-752P-201) 126755316-126755417 snRNA
ENSG00000279446 (AC005915.1)
 ENST00000624912 (AC005915.1-001) 127073587-127075604 TEC
CIL_0007S2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm109 VISTA 10090 18:56596918-57198991
GeneTranscriptPositionBiotype
ENSMUSG00000024590 (Lmnb1)
lamin B1 		ENSMUST00000025486 (Lmnb1-001) 56707813-56753424 protein_coding
ENSMUST00000128651 (Lmnb1-002) 56728441-56733456 retained_intron
ENSMUSG00000024592 (C330018D20Rik)
RIKEN cDNA C330018D20 gene 		ENSMUST00000025488 (C330018D20Rik-001) 56955833-56975368 protein_coding
ENSMUST00000139243 (C330018D20Rik-002) 56957614-56975354 protein_coding
ENSMUST00000152087 (C330018D20Rik-003) 56968520-56975246 processed_transcript
ENSMUSG00000024593 (Megf10)
multiple EGF-like-domains 10 		ENSMUST00000075770 (Megf10-001) 57133090-57297467 protein_coding
ENSMUST00000139892 (Megf10-002) 57142786-57292728 protein_coding
ENSMUSG00000032656 (March3)
membrane-associated ring finger (C3HC4) 3 		ENSMUST00000035278 (March3-003) 56775852-56812019 protein_coding
ENSMUST00000102912 (March3-001) 56761716-56925548 protein_coding
ENSMUST00000153044 (March3-002) 56803669-56925515 retained_intron
ENSMUSG00000087597 (Gm15345)
predicted gene 15345 		ENSMUST00000128240 (Gm15345-001) 56769717-56801688 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113368 ENST00000261366 1.274±0.00 3.110±0.00 0.235±0.00 0.793±0.68 1.366±0.03 3.706±1.20 0.492±0.00 0.528±0.00 1.356±0.00 2.749±2.35 N/A 4.414±3.65 6.594±2.68 2.181±0.00
ENST00000395354 N/A N/A N/A N/A 1.082±0.00 N/A N/A 0.481±0.00 N/A N/A 0.337±0.00 1.732±0.00 N/A N/A
ENST00000460265 N/A N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A N/A N/A 1.220±0.00 N/A N/A
ENST00000463908 N/A N/A N/A N/A N/A N/A 0.336±0.00 N/A 2.322±0.00 1.581±0.00 N/A N/A N/A N/A
ENST00000472034 N/A N/A 0.421±0.00 N/A N/A N/A N/A 2.200±0.00 N/A N/A N/A N/A N/A N/A
ENST00000492190 N/A N/A 0.952±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494185 N/A N/A N/A N/A N/A N/A 0.257±0.00 1.247±0.00 N/A N/A 0.688±0.00 N/A N/A 8.084±0.00
ENST00000504788 1.310±0.00 2.680±0.00 N/A 0.731±0.06 3.702±0.00 2.648±2.06 0.081±0.00 0.819±0.00 N/A 1.752±0.49 0.096±0.00 5.061±2.92 3.187±2.50 3.751±0.26
ENST00000512460 N/A 3.472±0.00 0.445±0.00 2.040±0.00 N/A N/A N/A N/A 0.877±0.00 N/A N/A 20.282±0.00 18.285±0.00 8.837±1.90
ENSG00000145794 ENST00000274473 N/A N/A 0.039±0.00 1.785±0.72 N/A N/A 0.003±0.00 N/A 0.001±0.00 N/A N/A N/A N/A 0.222±0.00
ENST00000418761 0.014±0.00 N/A N/A N/A N/A 0.320±0.00 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000503335 N/A 0.010±0.00 0.005±0.00 4.676±0.00 0.041±0.00 0.049±0.01 0.004±0.00 N/A 0.024±0.02 0.033±0.00 0.403±0.15 N/A 0.030±0.00 N/A
ENST00000506709 0.106±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507158 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508365 N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A
ENST00000515002 N/A N/A N/A N/A 0.455±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515622 N/A N/A N/A N/A N/A N/A 0.246±0.00 0.768±0.00 N/A 0.119±0.00 N/A N/A N/A N/A
ENSG00000164241 ENST00000296662 0.297±0.00 0.357±0.00 N/A 0.432±0.00 0.720±0.00 0.477±0.00 0.727±0.00 N/A 0.437±0.00 N/A 0.147±0.00 0.745±0.05 0.346±0.03 2.316±0.00
ENST00000508527 0.081±0.00 N/A 0.406±0.00 N/A 0.187±0.08 N/A 0.189±0.02 0.186±0.00 N/A 0.444±0.34 0.314±0.00 0.473±0.28 0.059±0.00 1.560±1.13
ENST00000509733 N/A N/A N/A 0.625±0.00 N/A N/A N/A 1.294±0.00 N/A N/A N/A N/A 0.268±0.04 N/A
ENST00000515558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535381 N/A 0.236±0.00 N/A 0.109±0.00 0.272±0.00 N/A N/A 0.036±0.00 0.130±0.09 0.183±0.16 0.063±0.00 0.471±0.00 0.036±0.01 N/A
ENST00000606042 N/A N/A N/A N/A N/A N/A N/A N/A 0.805±0.00 N/A N/A N/A N/A N/A
ENST00000606937 N/A N/A 0.742±0.00 0.609±0.00 N/A 3.919±0.00 0.977±0.00 N/A 0.453±0.00 0.539±0.00 0.720±0.00 1.498±0.00 0.493±0.15 N/A
ENST00000607731 0.466±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000173926 ENST00000308660 0.293±0.00 2.507±0.00 0.014±0.00 0.819±0.00 0.317±0.17 1.049±0.89 0.935±0.65 0.361±0.00 0.098±0.05 0.590±0.42 0.209±0.03 0.722±0.14 0.443±0.07 2.041±0.11
ENST00000502289 N/A N/A N/A 2.924±0.00 1.249±0.00 2.711±1.16 N/A N/A N/A 4.881±0.00 0.751±0.33 N/A 1.067±0.00 N/A
ENST00000504239 N/A N/A N/A N/A N/A N/A N/A N/A 1.804±0.00 N/A N/A N/A N/A N/A
ENST00000506088 2.517±0.00 6.333±0.00 N/A 1.011±0.72 1.235±0.00 2.905±1.93 2.663±1.87 0.936±0.00 0.619±0.00 2.624±0.00 N/A 2.118±0.99 2.999±1.36 27.137±19.18
ENST00000515241 N/A N/A 0.407±0.00 0.237±0.00 2.458±0.00 1.774±0.00 N/A N/A 0.745±0.00 0.844±0.00 N/A N/A N/A N/A
ENSG00000249768 ENST00000508631 0.254±0.00 0.569±0.00 N/A 0.366±0.00 0.279±0.00 0.051±0.00 0.055±0.00 0.144±0.00 0.741±0.72 0.128±0.00 N/A 0.050±0.01 N/A 0.132±0.00
ENSG00000250956 ENST00000509908 2.162±0.00 2.887±0.00 N/A 2.218±0.00 2.988±0.00 2.416±0.00 0.275±0.00 2.762±0.00 0.840±0.00 0.605±0.00 0.269±0.00 20.963±0.00 N/A 1.499±0.00
ENSG00000251072 ENST00000509185 N/A N/A N/A 0.037±0.00 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.367±0.16
ENSG00000252185 ENST00000516376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.205±0.00
ENSG00000279446 ENST00000624912 N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A 0.131±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024590 ENSMUST00000025486 3.379±2.28 1.715±0.36 4.695±0.36 27.412±17.86 3.364±2.19 4.643±0.98 0.448±0.25 0.947±0.36 15.772±17.80 2.449±0.72 2.129±0.27 15.411±7.08 41.696±30.09 3.329±0.37
ENSMUST00000128651 N/A N/A N/A 8.668±0.00 N/A N/A N/A N/A N/A N/A N/A 80.034±0.00 194.823±165.20 26.795±0.00
ENSMUSG00000024592 ENSMUST00000025488 2.252±0.16 0.811±0.23 3.985±0.43 2.493±0.47 1.357±0.37 1.018±0.37 2.561±0.47 1.988±0.31 3.408±1.82 1.077±0.32 2.358±0.48 1.126±0.51 2.146±1.03 1.322±0.49
ENSMUST00000139243 N/A N/A N/A 0.996±0.00 N/A N/A N/A N/A N/A N/A N/A 1.566±1.01 2.124±1.13 2.168±0.40
ENSMUST00000152087 N/A 0.351±0.21 N/A N/A N/A 0.445±0.31 N/A N/A N/A 0.299±0.00 N/A 0.454±0.24 N/A 1.389±0.28
ENSMUSG00000024593 ENSMUST00000075770 0.028±0.01 0.175±0.08 0.080±0.04 2.161±0.51 0.045±0.02 0.137±0.06 0.086±0.05 0.014±0.01 0.014±0.00 0.093±0.04 0.031±0.00 1.929±0.76 0.029±0.03 0.046±0.02
ENSMUST00000139892 0.047±0.03 0.219±0.11 N/A N/A 0.051±0.03 0.110±0.05 0.113±0.01 0.034±0.00 0.030±0.00 0.063±0.04 0.064±0.00 3.274±0.89 0.008±0.00 0.088±0.06
ENSMUSG00000032656 ENSMUST00000035278 7.814±1.10 N/A 1.384±0.00 0.446±0.00 3.298±1.37 4.263±1.15 2.143±0.26 2.916±0.42 24.660±24.84 2.372±0.43 0.388±0.12 1.759±0.66 1.152±0.24 2.764±0.92
ENSMUST00000102912 N/A N/A N/A N/A N/A N/A N/A N/A 17.997±1.03 N/A 0.071±0.01 N/A N/A N/A
ENSMUST00000153044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087597 ENSMUST00000128240 0.335±0.20 0.097±0.01 0.016±0.00 N/A 0.204±0.11 0.095±0.00 0.293±0.25 0.082±0.03 0.188±0.04 0.144±0.05 N/A 0.201±0.13 0.052±0.04 0.044±0.00

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