C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonuclease P/MRP 30 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025714 Rpp30-201 ENSMUSG00000024800 10090 + 19:36083716-36104772 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025714
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025714 3.077±0.71 0.538±0.18 9.313±0.85 8.628±4.65 1.764±0.67 0.687±0.16 3.443±0.15 2.438±0.42 6.880±6.15 2.443±0.88 5.782±0.50 2.498±1.84 9.172±5.04 12.649±3.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BY CIL_0008BY_0002 VISTA 19:35829039-36429586
CIL_0005UK CIL_0005UK_0002 CGP 19:35958734-36104772
CIL_0001IP CIL_0001IP_0002 CGP 19:36083716-36119844

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004526 IEA ribonuclease P activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277882 RPP30-004 protein_coding Homo_sapiens 0 761
ENST00000371703 RPP30-001 protein_coding Homo_sapiens 0 1122
ENST00000413330 RPP30-201 protein_coding Homo_sapiens 0 985
ENST00000414836 RPP30-006 protein_coding Homo_sapiens 0 538
ENST00000466462 RPP30-007 processed_transcript Homo_sapiens 0 481
ENST00000470933 RPP30-009 processed_transcript Homo_sapiens 5.04467e-44 182
ENST00000479678 RPP30-010 processed_transcript Homo_sapiens 0 278
ENST00000480406 RPP30-008 processed_transcript Homo_sapiens 0 418
ENST00000487998 RPP30-005 retained_intron Homo_sapiens 0 704
ENST00000489806 RPP30-003 processed_transcript Homo_sapiens 0 414

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