C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-like, containing PHD and RING finger domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025739 Uhrf2-001 ENSMUSG00000024817 10090 + 19:30030513-30093722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025739 6.640±3.38 3.787±0.63 8.869±0.40 15.556±8.25 5.240±2.30 9.034±2.03 2.866±0.38 5.010±0.45 9.690±6.20 5.292±0.92 2.203±0.54 7.908±1.76 12.657±1.89 2.706±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D5 CIL_0001D5_0002 CGP 19:30003790-30093722
CIL_0001D8 CIL_0001D8_0002 CGP 19:30030513-30175418

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 ISS nucleus
GO:0005720 IDA nuclear heterochromatin
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0007049 IEA cell cycle
GO:0008270 IEA zinc ion binding
GO:0008283 ISS cell proliferation
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030154 ISS cell differentiation
GO:0042393 IDA histone binding
GO:0051865 ISS protein autoubiquitination
GO:0071158 ISS positive regulation of cell cycle arrest

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000276893 UHRF2-003 protein_coding Homo_sapiens 0 3618
ENST00000381373 UHRF2-002 protein_coding Homo_sapiens 0 424
ENST00000431339 UHRF2P1-001 processed_pseudogene Homo_sapiens 0 2446
ENST00000450508 UHRF2-004 protein_coding Homo_sapiens 0 470
ENST00000461236 UHRF2-013 processed_transcript Homo_sapiens 0 405
ENST00000468435 UHRF2-001 nonsense_mediated_decay Homo_sapiens 0 1873
ENST00000469298 UHRF2-011 processed_transcript Homo_sapiens 0 817
ENST00000477183 UHRF2-007 processed_transcript Homo_sapiens 0.00000000001 75
ENST00000479000 UHRF2-008 processed_transcript Homo_sapiens 0 195
ENST00000481049 UHRF2-012 processed_transcript Homo_sapiens 0 640
ENST00000484159 UHRF2-010 retained_intron Homo_sapiens 0 1303
ENST00000485617 UHRF2-005 processed_transcript Homo_sapiens 0 1615
ENST00000492853 UHRF2-006 processed_transcript Homo_sapiens 0 1131

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